Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR4330-201ENST00000579077 105 ntBASIC5.75□□□□□ -1.49
TRERF1Q96PN7 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 AC005899.2-201ENST00000584353 90 ntBASIC5.75□□□□□ -1.49
TRERF1Q96PN7 PSMA6P4-201ENST00000603247 718 ntBASIC5.75□□□□□ -1.49
TRERF1Q96PN7 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 uc_338.18-201ENST00000615451 175 ntBASIC5.75□□□□□ -1.49
TRERF1Q96PN7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.75□□□□□ -1.49
TRERF1Q96PN7 SDAD1P1-202ENST00000524156 2051 ntBASIC5.75□□□□□ -1.49
TRERF1Q96PN7 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC008669.1-201ENST00000565823 2178 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 RNU5E-6P-201ENST00000365574 115 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 SNORA70.10-201ENST00000384515 134 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 SNORD70.1-201ENST00000391007 85 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL451074.5-201ENST00000415894 435 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL353597.2-202ENST00000434901 373 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AP001992.1-205ENST00000462248 379 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 RNU6-897P-201ENST00000517135 105 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 RNU6-323P-201ENST00000521915 107 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC012339.2-201ENST00000523996 453 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC063949.1-201ENST00000552900 865 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL358913.1-201ENST00000554342 121 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC106782.4-201ENST00000568264 210 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC090615.1-201ENST00000577519 154 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 MIR4270-201ENST00000581799 70 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL161616.1-201ENST00000611867 286 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 MIR6798-201ENST00000612887 67 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AL596245.1-201ENST00000618994 362 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 AC099654.2-201ENST00000433031 1980 ntBASIC5.74□□□□□ -1.49
TRERF1Q96PN7 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
TRERF1Q96PN7 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 SAMMSON-226ENST00000642089 1582 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 RNA5SP191-201ENST00000362585 102 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AL035079.1-201ENST00000405210 287 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 MIR548H3-201ENST00000408771 118 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC108032.1-201ENST00000416706 207 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 RPL21P38-201ENST00000418090 167 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 COX6CP13-201ENST00000428703 226 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 RPS29P9-201ENST00000440360 171 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 FCF1P4-201ENST00000448326 183 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 NDUFB1P2-201ENST00000449477 176 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 CYCSP34-201ENST00000458172 304 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 LINC01399-202ENST00000458450 244 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC108078.2-201ENST00000510750 236 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 MIR4504-201ENST00000577413 92 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 MIR3667-201ENST00000581025 74 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 PRPF19P1-201ENST00000584766 898 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 U2.17-201ENST00000611454 95 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC130454.1-201ENST00000622948 401 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 ZNF33CP-201ENST00000432492 2030 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.73□□□□□ -1.49
TRERF1Q96PN7 AC108751.5-201ENST00000492880 1336 ntBASIC5.73□□□□□ -1.49
TRERF1Q96PN7 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms