Protein–RNA interactions for Protein: Q96A33

CCDC47, Coiled-coil domain-containing protein 47, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47Q96A33 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC47Q96A33 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC47Q96A33 RNU5E-10P-201ENST00000363506 118 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 MIR23B-201ENST00000384832 97 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 MIR767-201ENST00000390228 109 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AL355143.1-201ENST00000407101 841 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 RPL7P8-201ENST00000411964 730 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC099548.1-201ENST00000421443 426 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AL714022.1-201ENST00000439897 151 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC007327.1-201ENST00000447461 264 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 GSTA11P-201ENST00000452866 669 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 RNU7-23P-201ENST00000459465 62 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 MTND1P16-201ENST00000465177 898 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC116337.2-201ENST00000477662 156 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 SNORA9.3-201ENST00000516383 129 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC138761.3-201ENST00000579993 334 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 OR4K7P-201ENST00000580232 945 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AL353997.4-201ENST00000586196 166 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC024560.3-201ENST00000608482 349 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 UCA1.1-201ENST00000620952 75 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 MIR4275-201ENST00000636486 87 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC47Q96A33 AL161431.1-201ENST00000618966 4205 ntBASIC3.2□□□□□ -1.9
CCDC47Q96A33 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 RNU6-637P-201ENST00000384050 107 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC009414.1-201ENST00000427200 443 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 BMI1P1-201ENST00000445879 941 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC104978.1-201ENST00000449387 391 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 BX510359.1-201ENST00000456973 237 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC010546.1-201ENST00000569391 485 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC005951.2-201ENST00000576282 495 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 AL049777.1-201ENST00000622740 518 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC099654.8-201ENST00000637757 681 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC47Q96A33 AC135776.4-201ENST00000624300 1904 ntBASIC3.19□□□□□ -1.9
CCDC47Q96A33 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 RNA5SP374-201ENST00000362939 125 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 MIR1284-201ENST00000408337 120 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 TPMTP3-201ENST00000411928 735 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC009296.1-201ENST00000443146 155 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 CBWD4P-201ENST00000445695 655 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 ZNF886P-201ENST00000450781 723 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 NIPA2P5-201ENST00000452282 464 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 RPL31P41-201ENST00000477967 372 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC103975.1-201ENST00000482506 483 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 RPL23AP70-201ENST00000483361 460 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC021382.1-201ENST00000483523 359 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AP003497.1-201ENST00000528472 562 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AL355836.1-201ENST00000555951 870 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 RPL23AP84-201ENST00000571193 464 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC012493.2-201ENST00000595083 291 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC131235.4-201ENST00000609288 620 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AC103710.4-201ENST00000609301 899 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 AL359198.2-201ENST00000611836 194 ntBASIC3.18□□□□□ -1.9
CCDC47Q96A33 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC47Q96A33 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC47Q96A33 CR848007.1-201ENST00000442354 1699 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 MIR26A1-201ENST00000362205 77 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 VTRNA1-1-201ENST00000363120 99 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 Y_RNA.311-201ENST00000365068 96 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 SET-203ENST00000372688 801 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC47Q96A33 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC47Q96A33 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CCDC47Q96A33 MIR181A2-201ENST00000384863 110 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 AL512633.1-201ENST00000399931 655 ntBASIC3.17□□□□□ -1.9
CCDC47Q96A33 AL356421.1-201ENST00000403255 413 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms