Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MFSD8-236ENST00000641509 4050 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 RNA5SP97-201ENST00000365006 84 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 RNU4-48P-201ENST00000365559 182 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 SNORA4.3-201ENST00000365564 137 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 MIR7-3-201ENST00000384898 110 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.579-201ENST00000390939 94 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 SNORA3.3-201ENST00000408712 125 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC012065.2-201ENST00000421295 375 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 ERLEC1P1-201ENST00000433806 578 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 RPS20P5-201ENST00000434808 360 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 GTF2IP13-201ENST00000438487 386 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC092013.1-201ENST00000438795 332 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC073415.1-201ENST00000449240 153 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 UBE2CP3-201ENST00000502715 450 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 KLHL2P1-201ENST00000508691 521 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC022968.1-201ENST00000567372 442 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 SRGNP1-201ENST00000603392 451 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 OR6R2P-201ENST00000609216 300 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 MIR7702-201ENST00000621931 59 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 AC083843.3-201ENST00000623679 2186 ntBASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.18□□□□□ -1.58
USHBP1Q8N6Y0 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC073343.1-201ENST00000328239 651 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.202-201ENST00000364083 110 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.216-201ENST00000364205 93 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.231-201ENST00000364358 102 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-43P-201ENST00000384302 107 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-1160P-201ENST00000384546 104 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 SNORD37.1-201ENST00000390968 65 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL359643.1-201ENST00000404109 423 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.615-201ENST00000410769 117 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 MTCO2P27-201ENST00000420740 428 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL451054.2-201ENST00000420896 202 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 MTCYBP8-201ENST00000422855 651 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 UBE2V1P13-201ENST00000436983 439 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC108734.1-201ENST00000439549 399 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC006511.1-201ENST00000470614 315 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC018552.3-201ENST00000567416 561 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC090615.1-201ENST00000577519 154 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC105224.1-201ENST00000587055 421 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC007179.3-201ENST00000604976 235 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-89P-201ENST00000606519 100 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL022345.1-201ENST00000607292 135 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AL391261.4-201ENST00000616012 481 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 AC079597.1-201ENST00000624306 508 ntBASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USHBP1Q8N6Y0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC092435.4-201ENST00000623012 4159 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC130650.2-201ENST00000618736 2403 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC090229.1-201ENST00000590983 1609 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.100-201ENST00000363141 102 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms