Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC096533.1-201ENST00000411645 353 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 TOMM22P1-201ENST00000418578 312 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 RPS26P56-201ENST00000444468 240 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL031659.1-201ENST00000447075 539 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC092798.1-201ENST00000458542 409 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 MTCYBP41-201ENST00000528913 1123 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 MYL12BP1-201ENST00000569826 507 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL590099.1-201ENST00000615276 138 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC012150.2-201ENST00000621300 544 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 RNU6-582P-201ENST00000362989 107 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 MIR7-1-201ENST00000384871 110 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC092447.6-201ENST00000414578 210 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL358453.1-201ENST00000422522 250 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 HMGN2P16-201ENST00000456802 261 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 SEM1P1-201ENST00000506694 209 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC084033.1-201ENST00000550830 633 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 AL049838.1-201ENST00000563647 981 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 WISP1-OT1-201ENST00000602893 642 ntBASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC88AQ3V6T2 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 RNA5SP393-201ENST00000363423 117 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 ZNF736P10Y-201ENST00000403990 1110 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AL590623.1-201ENST00000427864 105 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AC027124.2-201ENST00000428249 105 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 ARPC3P1-201ENST00000437218 533 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AL021397.1-201ENST00000451806 248 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 RPS29P20-201ENST00000489592 171 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 HMGB1P47-201ENST00000511281 589 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AC087373.1-201ENST00000524920 491 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 MTND2P26-201ENST00000528255 1029 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 MIR3199-1-201ENST00000582434 88 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 MIR4452-201ENST00000583004 71 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 SNORD84-203ENST00000584275 78 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 GLUD1P4-201ENST00000590914 418 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 AL109653.1-201ENST00000603091 248 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC88AQ3V6T2 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 UBE2L2-201ENST00000254302 429 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 RNU6-50P-201ENST00000362356 103 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 Y_RNA.224-201ENST00000364308 111 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 RNU6-1151P-201ENST00000384684 107 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 BX682237.1-201ENST00000415016 335 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC009237.2-201ENST00000421358 284 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 LSM1P1-201ENST00000438629 273 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 NF1P3-201ENST00000457709 450 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 RNU4-52P-201ENST00000384209 138 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AL136372.1-201ENST00000403060 228 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 Z85994.2-201ENST00000434327 452 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC108734.3-201ENST00000481241 1165 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC104057.1-201ENST00000515547 497 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AP000790.1-201ENST00000528891 737 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 CBX3P4-201ENST00000538909 354 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 MTCO3P24-201ENST00000572729 782 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 CBX3P2-202ENST00000583365 535 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 MIR8081-201ENST00000611533 95 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 MIR6076-201ENST00000617521 113 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 AC083865.1-201ENST00000636634 831 ntBASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC88AQ3V6T2 Z82195.2-201ENST00000612348 18351 ntBASIC2.15□□□□□ -2.06
CCDC88AQ3V6T2 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 MTND5P31-201ENST00000419366 1374 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AC090740.1-201ENST00000623193 2262 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-1180P-201ENST00000364935 107 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 MIR421-201ENST00000365696 85 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-152P-201ENST00000384037 107 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 AL121972.1-201ENST00000402023 252 ntBASIC2.15□□□□□ -2.07
CCDC88AQ3V6T2 RPL17P12-201ENST00000413391 526 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms