Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC022513.1-201ENST00000624512 117 ntBASIC1.01□□□□□ -2.25
COL7A1Q02388 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1.01□□□□□ -2.25
COL7A1Q02388 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
COL7A1Q02388 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1□□□□□ -2.25
COL7A1Q02388 Y_RNA.167-201ENST00000363735 109 ntBASIC1□□□□□ -2.25
COL7A1Q02388 SNORA67.6-201ENST00000391093 99 ntBASIC1□□□□□ -2.25
COL7A1Q02388 RNU6-603P-201ENST00000411403 107 ntBASIC1□□□□□ -2.25
COL7A1Q02388 AL445183.3-201ENST00000414168 502 ntBASIC1□□□□□ -2.25
COL7A1Q02388 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 RPS26P21-201ENST00000475397 348 ntBASIC1□□□□□ -2.25
COL7A1Q02388 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1□□□□□ -2.25
COL7A1Q02388 MIR3935-201ENST00000583472 104 ntBASIC1□□□□□ -2.25
COL7A1Q02388 MIR4723-201ENST00000585070 81 ntBASIC1□□□□□ -2.25
COL7A1Q02388 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1□□□□□ -2.25
COL7A1Q02388 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
COL7A1Q02388 MIRLET7G-201ENST00000362280 84 ntBASIC1□□□□□ -2.25
COL7A1Q02388 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
COL7A1Q02388 AL033519.2-201ENST00000403958 392 ntBASIC1□□□□□ -2.25
COL7A1Q02388 AL445669.1-201ENST00000426743 755 ntBASIC1□□□□□ -2.25
COL7A1Q02388 UBE2V2P1-201ENST00000434717 398 ntBASIC1□□□□□ -2.25
COL7A1Q02388 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 RNA5SP121-201ENST00000516537 101 ntBASIC1□□□□□ -2.25
COL7A1Q02388 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1□□□□□ -2.25
COL7A1Q02388 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1□□□□□ -2.25
COL7A1Q02388 SETP2-201ENST00000553886 926 ntBASIC1□□□□□ -2.25
COL7A1Q02388 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1□□□□□ -2.25
COL7A1Q02388 MIR4446-201ENST00000578505 67 ntBASIC1□□□□□ -2.25
COL7A1Q02388 MIR3618-201ENST00000580330 88 ntBASIC1□□□□□ -2.25
COL7A1Q02388 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 HMGB1P5-201ENST00000255320 642 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 RNU4-91P-201ENST00000364778 135 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 SLC9B1P2-201ENST00000398120 1184 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 U3.40-201ENST00000408706 208 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 RNU2-37P-201ENST00000410695 177 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC0.99□□□□□ -2.25
COL7A1Q02388 SNRPFP3-201ENST00000457792 225 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC004223.1-201ENST00000479840 271 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC0.99□□□□□ -2.25
COL7A1Q02388 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC0.99□□□□□ -2.25
COL7A1Q02388 RNA5SP384-201ENST00000516615 116 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 RNU6-113P-201ENST00000516653 101 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC0.99□□□□□ -2.25
COL7A1Q02388 ZNF192P1-203ENST00000565888 810 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC0.99□□□□□ -2.25
COL7A1Q02388 RNU6-84P-201ENST00000607737 102 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AL449363.1-201ENST00000617815 186 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC0.99□□□□□ -2.25
COL7A1Q02388 BLOC1S2P1-201ENST00000428431 301 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 AL691517.1-201ENST00000440833 1235 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC0.99□□□□□ -2.25
COL7A1Q02388 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 AC090515.1-201ENST00000465295 476 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC0.99□□□□□ -2.25
COL7A1Q02388 AC008837.2-201ENST00000513076 418 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC0.99□□□□□ -2.25
COL7A1Q02388 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC0.99□□□□□ -2.25
COL7A1Q02388 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC0.99□□□□□ -2.25
COL7A1Q02388 MIR3660-201ENST00000584845 100 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC013553.2-201ENST00000604244 589 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC097468.3-201ENST00000607956 456 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 MTND5P10-201ENST00000603719 1809 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL7A1Q02388 AL078601.1-201ENST00000444542 271 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 VN1R96P-201ENST00000446052 858 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 OR51B8P-201ENST00000449892 769 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 RNU6-1132P-201ENST00000459214 107 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC005912.1-201ENST00000495392 255 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC007229.1-201ENST00000590455 412 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC090525.3-201ENST00000605601 189 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 AC104307.1-201ENST00000616142 196 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 SNHG22-203ENST00000617833 660 ntBASIC0.99□□□□□ -2.25
COL7A1Q02388 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC0.98□□□□□ -2.25
COL7A1Q02388 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
COL7A1Q02388 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC0.98□□□□□ -2.25
COL7A1Q02388 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC0.98□□□□□ -2.25
COL7A1Q02388 AL109653.1-201ENST00000603091 248 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AC006329.2-201ENST00000611491 394 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AC098657.3-201ENST00000620434 263 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC0.98□□□□□ -2.25
COL7A1Q02388 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.98□□□□□ -2.25
COL7A1Q02388 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
COL7A1Q02388 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC0.98□□□□□ -2.25
COL7A1Q02388 Z85995.1-201ENST00000415547 335 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AL445305.1-201ENST00000432577 575 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.98□□□□□ -2.25
COL7A1Q02388 RGS5-217ENST00000451759 835 ntTSL 3 BASIC0.98□□□□□ -2.25
COL7A1Q02388 RPS15AP1-201ENST00000457423 391 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AC023424.2-201ENST00000493479 777 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 RPL37P25-201ENST00000507308 276 ntBASIC0.98□□□□□ -2.25
COL7A1Q02388 AC084364.2-201ENST00000546924 395 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms