Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPS15AP36-201ENST00000492022 382 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 RN7SL604P-201ENST00000492589 296 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC019235.1-201ENST00000503847 207 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC093840.1-201ENST00000511599 336 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 RNU6-64P-201ENST00000517119 105 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA1P49639 AC134698.4-201ENST00000523451 826 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA1P49639 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXA1P49639 RBM11P1-201ENST00000604951 799 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AC103710.2-201ENST00000609912 942 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AL450472.3-201ENST00000615578 367 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 uc_338.12-201ENST00000616344 181 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 U4.5-201ENST00000617137 123 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXA1P49639 AL353748.2-201ENST00000622148 471 ntBASIC3.21□□□□□ -1.9
HOXA1P49639 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA1P49639 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA1P49639 AC058791.1-201ENST00000608412 3198 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC026951.1-201ENST00000559530 2459 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA1P49639 RNA5SP235-201ENST00000365411 114 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 RNU6-637P-201ENST00000384050 107 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 RNU6-432P-201ENST00000384196 109 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 MIR1-2-201ENST00000384961 85 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 MIR181A1-201ENST00000385026 110 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AP000567.1-201ENST00000406413 156 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 RNU2-9P-201ENST00000410194 145 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 RNA5SP107-201ENST00000411358 122 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 HMGN1P24-201ENST00000412282 298 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 HSPE1P12-201ENST00000412576 301 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXA1P49639 BEND7P1-201ENST00000422058 457 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 USP9YP18-201ENST00000425912 695 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 HMGB1P37-201ENST00000439613 609 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 MTCO3P38-201ENST00000468910 766 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXA1P49639 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA1P49639 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA1P49639 AC099522.1-202ENST00000514718 367 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC090572.1-201ENST00000519251 160 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA1P49639 AP001893.2-201ENST00000526949 202 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA1P49639 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA1P49639 ARL2BPP2-201ENST00000550907 489 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AL121603.1-201ENST00000553815 142 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXA1P49639 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA1P49639 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA1P49639 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXA1P49639 MIR4715-201ENST00000584117 79 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC004908.2-201ENST00000609090 574 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC139792.3-201ENST00000623525 224 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC019226.1-201ENST00000625666 515 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 AC244258.1-201ENST00000637553 1071 ntBASIC3.2□□□□□ -1.9
HOXA1P49639 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA1P49639 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA1P49639 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
HOXA1P49639 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA1P49639 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA1P49639 AC093536.2-201ENST00000565257 1406 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 MIR383-201ENST00000362257 73 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 RNA5SP295-201ENST00000362655 121 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 RNU1-132P-201ENST00000364300 164 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA1P49639 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA1P49639 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HOXA1P49639 RNU1-39P-201ENST00000383897 165 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 RNU6-1103P-201ENST00000384150 107 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 RNU2-36P-201ENST00000410361 191 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA1P49639 ELOCP19-201ENST00000411919 318 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC108032.1-201ENST00000416706 207 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA1P49639 RPL23AP38-201ENST00000423801 469 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 BTF3P10-201ENST00000433415 495 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 RBMX2P4-201ENST00000441256 376 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC006480.1-201ENST00000449887 378 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA1P49639 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA1P49639 RNU7-59P-201ENST00000459101 61 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA1P49639 AC078918.1-201ENST00000498515 228 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 FAM92A1P2-202ENST00000504766 877 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC108475.1-201ENST00000507880 950 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 MTND4LP22-201ENST00000508209 276 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC110768.1-201ENST00000509222 400 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC010493.1-201ENST00000513479 292 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 SNORA31.20-201ENST00000517111 133 ntBASIC3.19□□□□□ -1.9
HOXA1P49639 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXA1P49639 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA1P49639 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms