Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MRPL50P2-201ENST00000416821 482 ntBASIC3□□□□□ -1.93
CDX1P47902 USP9YP13-201ENST00000417797 480 ntBASIC3□□□□□ -1.93
CDX1P47902 AC091390.3-201ENST00000426478 338 ntBASIC3□□□□□ -1.93
CDX1P47902 AL356583.2-201ENST00000426536 280 ntBASIC3□□□□□ -1.93
CDX1P47902 AL158071.1-201ENST00000430315 461 ntBASIC3□□□□□ -1.93
CDX1P47902 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3□□□□□ -1.93
CDX1P47902 RPL23AP22-201ENST00000437556 453 ntBASIC3□□□□□ -1.93
CDX1P47902 AC009969.1-201ENST00000438726 172 ntBASIC3□□□□□ -1.93
CDX1P47902 RANP8-201ENST00000444720 713 ntBASIC3□□□□□ -1.93
CDX1P47902 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3□□□□□ -1.93
CDX1P47902 RNU6-420P-201ENST00000458780 107 ntBASIC3□□□□□ -1.93
CDX1P47902 RPL21P129-201ENST00000491732 478 ntBASIC3□□□□□ -1.93
CDX1P47902 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3□□□□□ -1.93
CDX1P47902 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 PAICSP4-201ENST00000517543 1253 ntBASIC3□□□□□ -1.93
CDX1P47902 AC023632.4-201ENST00000517783 191 ntBASIC3□□□□□ -1.93
CDX1P47902 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3□□□□□ -1.93
CDX1P47902 AC087373.1-201ENST00000524920 491 ntBASIC3□□□□□ -1.93
CDX1P47902 AP002748.2-201ENST00000528671 348 ntBASIC3□□□□□ -1.93
CDX1P47902 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3□□□□□ -1.93
CDX1P47902 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3□□□□□ -1.93
CDX1P47902 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3□□□□□ -1.93
CDX1P47902 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3□□□□□ -1.93
CDX1P47902 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3□□□□□ -1.93
CDX1P47902 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 MIR1254-2-201ENST00000579553 63 ntBASIC3□□□□□ -1.93
CDX1P47902 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 AC245389.1-201ENST00000605141 529 ntBASIC3□□□□□ -1.93
CDX1P47902 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 AC108747.1-201ENST00000609508 535 ntBASIC3□□□□□ -1.93
CDX1P47902 AC009878.1-201ENST00000621819 340 ntBASIC3□□□□□ -1.93
CDX1P47902 AC110801.1-201ENST00000623590 212 ntBASIC3□□□□□ -1.93
CDX1P47902 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3□□□□□ -1.93
CDX1P47902 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3□□□□□ -1.93
CDX1P47902 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CDX1P47902 AL049641.1-201ENST00000441055 1948 ntBASIC2.99□□□□□ -1.93
CDX1P47902 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CDX1P47902 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
CDX1P47902 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CDX1P47902 RNY4P16-201ENST00000364768 94 ntBASIC2.99□□□□□ -1.93
CDX1P47902 SNORA62.3-201ENST00000365110 153 ntBASIC2.99□□□□□ -1.93
CDX1P47902 RNU6-741P-201ENST00000383889 107 ntBASIC2.99□□□□□ -1.93
CDX1P47902 SNORA48.7-201ENST00000391302 135 ntBASIC2.99□□□□□ -1.93
CDX1P47902 SNORA26.8-201ENST00000391306 124 ntBASIC2.99□□□□□ -1.93
CDX1P47902 PTMAP2-201ENST00000397627 327 ntBASIC2.99□□□□□ -1.93
CDX1P47902 MRPL42P2-201ENST00000403169 426 ntBASIC2.99□□□□□ -1.93
CDX1P47902 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AL139247.1-201ENST00000422768 325 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AL591419.1-201ENST00000427423 339 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC2.99□□□□□ -1.93
CDX1P47902 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.99□□□□□ -1.93
CDX1P47902 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AC092641.1-201ENST00000440229 772 ntBASIC2.99□□□□□ -1.93
CDX1P47902 PIGFP3-201ENST00000441918 722 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 GAPDHP27-201ENST00000447427 1020 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AC140076.1-201ENST00000449897 361 ntBASIC2.99□□□□□ -1.93
CDX1P47902 SNRPGP6-201ENST00000451124 220 ntBASIC2.99□□□□□ -1.93
CDX1P47902 SSXP1-201ENST00000453640 473 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AL031183.1-201ENST00000457667 207 ntBASIC2.99□□□□□ -1.93
CDX1P47902 RN7SL542P-201ENST00000467147 294 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AP002812.1-201ENST00000495378 474 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.99□□□□□ -1.93
CDX1P47902 MTND5P13-201ENST00000513046 1079 ntBASIC2.99□□□□□ -1.93
CDX1P47902 RNU6-1282P-201ENST00000516735 96 ntBASIC2.99□□□□□ -1.93
CDX1P47902 RNU1-45P-201ENST00000517191 141 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AC100870.1-201ENST00000522035 505 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AL157394.1-201ENST00000562983 1224 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 MIR548AB-201ENST00000584917 84 ntBASIC2.99□□□□□ -1.93
CDX1P47902 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AC012065.4-201ENST00000602445 679 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.99□□□□□ -1.93
CDX1P47902 AC104010.1-201ENST00000616889 150 ntBASIC2.99□□□□□ -1.93
CDX1P47902 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.99□□□□□ -1.93
CDX1P47902 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.99□□□□□ -1.93
CDX1P47902 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.98□□□□□ -1.93
CDX1P47902 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.98□□□□□ -1.93
CDX1P47902 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CDX1P47902 DYNLT3P1-201ENST00000378574 347 ntBASIC2.98□□□□□ -1.93
CDX1P47902 RNA5SP252-201ENST00000391131 119 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL021407.1-201ENST00000404531 386 ntBASIC2.98□□□□□ -1.93
CDX1P47902 AL359634.1-202ENST00000404721 284 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms