Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD3P31249 MIR372-201ENST00000362225 67 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNU6-845P-201ENST00000362578 103 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 Y_RNA.142-201ENST00000363491 102 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNA5SP175-201ENST00000364275 119 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 Y_RNA.356-201ENST00000365475 113 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNU6-629P-201ENST00000384061 103 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNU6-1029P-201ENST00000384109 107 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNU6-767P-201ENST00000384132 107 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 SNORA24.1-201ENST00000384401 135 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 MIR3074-201ENST00000384885 81 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNU6-903P-201ENST00000391270 109 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL121834.1-202ENST00000404494 277 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL445189.1-201ENST00000405722 338 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RNA5SP118-201ENST00000410385 109 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 Y_RNA.615-201ENST00000410769 117 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 BX323014.1-201ENST00000412876 237 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 RPS7P15-201ENST00000415804 584 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 PDCL2P1-201ENST00000419302 352 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL139095.3-201ENST00000419672 1203 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AC099677.1-201ENST00000420575 175 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL353678.1-201ENST00000422735 741 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 DUTP6-201ENST00000425573 462 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD3P31249 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD3P31249 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD3P31249 AC004866.2-201ENST00000438285 481 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 MTND4LP16-201ENST00000440828 295 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 CBWD4P-201ENST00000445695 655 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 RPL35AP15-201ENST00000468042 339 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD3P31249 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 AC112206.3-201ENST00000514578 389 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AC105417.1-201ENST00000514691 285 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 OR5BN1P-201ENST00000532955 829 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 TRAV8-5-201ENST00000537369 341 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 OR8R1P-201ENST00000543943 764 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD3P31249 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD3P31249 AC093227.2-201ENST00000589357 285 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL356055.1-201ENST00000602528 446 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 uc_338.32-201ENST00000615087 172 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AL021997.2-201ENST00000615674 271 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 AC011155.2-201ENST00000623202 216 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD3P31249 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
HOXD3P31249 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD3P31249 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD3P31249 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.34□□□□□ -1.88
HOXD3P31249 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD3P31249 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD3P31249 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.34□□□□□ -1.88
HOXD3P31249 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.34□□□□□ -1.88
HOXD3P31249 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HOXD3P31249 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
HOXD3P31249 AL645937.1-201ENST00000641739 1652 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
HOXD3P31249 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 Y_RNA.263-201ENST00000364659 114 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 SNORD81.2-201ENST00000365153 76 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 RNA5SP283-201ENST00000365604 119 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 SNORA32.2-201ENST00000384049 122 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 SNORD37.1-201ENST00000390968 65 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC097374.1-203ENST00000400783 485 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 RNU4-65P-201ENST00000410473 140 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD3P31249 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 RPL7P2-201ENST00000427639 268 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC079780.1-201ENST00000428259 207 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD3P31249 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXD3P31249 AC093019.1-201ENST00000443135 252 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 AL162389.1-201ENST00000449233 177 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD3P31249 MTND3P22-201ENST00000510932 243 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD3P31249 RNA5SP309-201ENST00000516670 106 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 RNU6-1092P-201ENST00000516955 87 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 AC090151.1-201ENST00000520784 730 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC107953.1-201ENST00000522216 297 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD3P31249 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD3P31249 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD3P31249 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD3P31249 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD3P31249 AC243972.3-201ENST00000539655 198 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 GLYCAM1-201ENST00000546596 285 ntBASIC3.33□□□□□ -1.88
HOXD3P31249 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms