Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNA5SP424-201ENST00000390988 115 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 CYCSP19-201ENST00000411715 316 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 HMGB3P20-201ENST00000417997 600 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AL139247.1-201ENST00000422768 325 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
SMARCA1P28370 DPPA2P1-201ENST00000428060 556 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.36□□□□□ -1.71
SMARCA1P28370 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 OR4K11P-201ENST00000431829 904 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 AC000111.3-201ENST00000433478 193 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 RPL21P112-201ENST00000434403 463 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 AL353572.1-201ENST00000442490 417 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 U8.18-201ENST00000459285 133 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AC069499.1-201ENST00000489433 509 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 MIR2114-201ENST00000516645 80 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.36□□□□□ -1.71
SMARCA1P28370 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.36□□□□□ -1.71
SMARCA1P28370 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.36□□□□□ -1.71
SMARCA1P28370 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.36□□□□□ -1.71
SMARCA1P28370 OR4K8P-201ENST00000578842 1048 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 HMGB1P50-201ENST00000605814 607 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 uc_338.12-201ENST00000616344 181 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 AL161637.1-201ENST00000622380 412 ntBASIC4.36□□□□□ -1.71
SMARCA1P28370 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.36□□□□□ -1.71
SMARCA1P28370 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.36□□□□□ -1.71
SMARCA1P28370 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SMARCA1P28370 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 RNU5A-8P-201ENST00000364102 114 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 RNU6-1078P-201ENST00000364522 103 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 RNA5SP189-201ENST00000364920 115 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 RNY3P13-201ENST00000365542 102 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 Y_RNA.390-201ENST00000383932 102 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 RN7SKP27-201ENST00000410684 333 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC022028.1-201ENST00000412054 408 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SMARCA1P28370 MTCO3P12-201ENST00000416718 547 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC017083.1-201ENST00000428093 483 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.35□□□□□ -1.71
SMARCA1P28370 MTND1P9-201ENST00000453775 944 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 ANP32BP2-201ENST00000454525 545 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 MTCO2P29-201ENST00000465212 189 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC023194.1-201ENST00000493084 308 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC105914.1-201ENST00000511798 226 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC022695.1-201ENST00000522089 237 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AP004242.1-201ENST00000533701 349 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.35□□□□□ -1.71
SMARCA1P28370 SUB1P2-201ENST00000556401 297 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC034105.4-201ENST00000568304 277 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 COX6CP3-201ENST00000580869 223 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AC007038.2-201ENST00000608095 740 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC006338.1-201ENST00000618453 749 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.35□□□□□ -1.71
SMARCA1P28370 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.35□□□□□ -1.71
SMARCA1P28370 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SMARCA1P28370 AC018555.1-201ENST00000567548 1980 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.34□□□□□ -1.71
SMARCA1P28370 AC004925.1-201ENST00000624256 2706 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.34□□□□□ -1.71
SMARCA1P28370 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 OR1S2-201ENST00000302592 978 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 SNORA31-201ENST00000362607 130 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
SMARCA1P28370 RNY3P14-201ENST00000384309 102 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 MIR1277-201ENST00000408536 78 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 HMGN1P24-201ENST00000412282 298 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 USP9YP6-201ENST00000413550 854 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 ELOCP4-201ENST00000420090 333 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AC099677.1-201ENST00000420575 175 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.34□□□□□ -1.71
SMARCA1P28370 AC010655.1-201ENST00000449336 292 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 MTND2P24-201ENST00000453434 806 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 HMGN2P7-201ENST00000456186 273 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms