Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 TUG1_1.1-201ENST00000610654 145 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC091903.1-201ENST00000624322 454 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 SNORA50A-202ENST00000629536 136 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 PCMTD1P7-201ENST00000634506 357 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC099063.3-201ENST00000642066 185 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 CUL1P1-201ENST00000509510 2425 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL079305.1-201ENST00000623159 3008 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 MAPK10-322ENST00000641485 4530 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RNU6-500P-201ENST00000362349 107 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RNU6-97P-201ENST00000363387 104 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 Y_RNA.169-201ENST00000363745 96 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AL049545.1-201ENST00000401856 572 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 U3.42-201ENST00000408746 214 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RNU4-72P-201ENST00000410754 173 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 MTCO1P17-201ENST00000411522 491 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC007899.1-201ENST00000412776 775 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 USP9YP26-201ENST00000421008 661 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 USP9YP36-201ENST00000424581 829 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RPS6P15-201ENST00000431996 751 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RPS3AP43-201ENST00000479743 781 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC021382.1-201ENST00000483523 359 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC006445.1-201ENST00000491925 405 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 OR2A20P-203ENST00000498397 1268 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC010486.2-201ENST00000505572 483 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 POU5F1P7-201ENST00000508759 541 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 MTND5P4-201ENST00000514978 288 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 SNORA70.24-201ENST00000517233 118 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 RNU6-711P-201ENST00000517255 106 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC104027.1-201ENST00000521887 300 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC013828.2-201ENST00000532487 235 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC004024.1-201ENST00000549244 247 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC090616.2-202ENST00000584248 222 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC068313.1-201ENST00000604028 1008 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC008962.1-201ENST00000605729 304 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC006111.3-201ENST00000622137 383 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC079248.2-201ENST00000623779 326 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC092192.1-201ENST00000633154 1018 ntBASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.43□□□□□ -1.86
CPSF3Q9UKF6 AC103988.1-201ENST00000566382 2177 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 TAB3P1-202ENST00000452645 1634 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 OR1S2-201ENST00000302592 978 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RNU6-853P-201ENST00000364306 107 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 SKINT1L-201ENST00000401057 817 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RPL23AP39-201ENST00000415533 405 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC234781.2-201ENST00000426370 994 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 MTATP6P4-201ENST00000427725 675 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL121871.1-201ENST00000443413 436 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RAC1P7-201ENST00000445367 377 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC106872.3-201ENST00000495104 446 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC022447.3-201ENST00000506865 495 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 SNORA31.1-201ENST00000515993 133 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 SNORA31.5-201ENST00000516190 133 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RNU6-759P-201ENST00000516740 103 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 RNU6-232P-201ENST00000517144 64 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AP001804.3-201ENST00000525146 880 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AP004247.1-201ENST00000531556 1289 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC068587.4-201ENST00000533893 186 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC011260.1-201ENST00000578420 472 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 UBL5P2-201ENST00000583788 219 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 BNIP3P23-201ENST00000599655 511 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC107214.2-201ENST00000608204 634 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 MIR6076-201ENST00000617521 113 ntBASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.42□□□□□ -1.86
CPSF3Q9UKF6 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 272.8 ms