Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 BBIP1P1-201ENST00000602999 279 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AP000240.1-201ENST00000609910 452 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 TUG1_1.1-201ENST00000610654 145 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC068787.1-201ENST00000623908 691 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.15□□□□□ -1.9
VPS54Q9P1Q0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 COTL1P1-201ENST00000422309 375 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 Z80107.1-201ENST00000436830 412 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 MEMO1P3-201ENST00000459811 302 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC090525.1-201ENST00000479116 478 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC097462.2-201ENST00000504623 481 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC117522.3-201ENST00000507974 584 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC110760.3-202ENST00000515177 371 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 RNA5SP385-201ENST00000515947 110 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 ERHP1-201ENST00000523006 310 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AP001804.3-201ENST00000525146 880 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 OR6C7P-201ENST00000547875 934 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC034268.2-201ENST00000571784 482 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 MIR3605-201ENST00000583214 100 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 MIR4506-201ENST00000584693 77 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC061975.8-201ENST00000587058 721 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL133507.1-201ENST00000605269 557 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC008962.1-201ENST00000605729 304 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AC107871.2-201ENST00000612894 502 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL357080.1-201ENST00000617394 239 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL445264.1-201ENST00000621719 171 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 AL513185.3-201ENST00000433335 1300 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 TAB3P1-202ENST00000452645 1634 ntBASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS54Q9P1Q0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 FRG1BP-201ENST00000278882 761 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 SNORA80A-201ENST00000363922 136 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 RNU6-289P-201ENST00000364093 107 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 RNU6-1077P-201ENST00000410506 102 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC105272.1-201ENST00000438604 198 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 GAPDHP27-201ENST00000447427 1020 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 MTND1P31-201ENST00000449206 961 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC096576.1-201ENST00000489014 359 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC093281.2-201ENST00000510153 597 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 RNA5SP76-201ENST00000516277 87 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 SNORA9.3-201ENST00000516383 129 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 LARP7P3-201ENST00000579888 337 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 VN1R90P-201ENST00000595717 726 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC013444.2-201ENST00000603317 787 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AL590099.1-201ENST00000615276 138 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC091046.2-201ENST00000620775 665 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC079228.1-201ENST00000624774 1049 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 AC006927.4-201ENST00000639187 543 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 API5P2-201ENST00000397055 1498 ntBASIC3.14□□□□□ -1.91
VPS54Q9P1Q0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS54Q9P1Q0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms