Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AC093156.1-201ENST00000440382 670 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.35□□□□□ -1.87
USP28Q96RU2 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.35□□□□□ -1.87
USP28Q96RU2 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USP28Q96RU2 PRSS3P4-201ENST00000453323 162 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC104308.1-201ENST00000454621 333 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 MEMO1P3-201ENST00000459811 302 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC097493.1-201ENST00000463958 372 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 PABPC1P3-201ENST00000469174 459 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC034236.1-201ENST00000469891 373 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 RPS23P3-201ENST00000470993 430 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.35□□□□□ -1.87
USP28Q96RU2 MTCO3P44-201ENST00000510977 541 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 RNU6-711P-201ENST00000517255 106 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AC007115.1-201ENST00000546853 234 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.35□□□□□ -1.87
USP28Q96RU2 VN1R92P-201ENST00000598511 928 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AF131215.7-201ENST00000602443 707 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 MTCYBP22-201ENST00000603788 447 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 YPEL5P2-201ENST00000605553 359 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AL590240.3-201ENST00000621416 943 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USP28Q96RU2 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.35□□□□□ -1.87
USP28Q96RU2 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
USP28Q96RU2 MTND4P16-201ENST00000466108 1367 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 OR4G11P-202ENST00000642116 1414 ntBASIC3.35□□□□□ -1.87
USP28Q96RU2 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP28Q96RU2 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP28Q96RU2 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL672167.1-206ENST00000356293 943 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 RNA5SP258-201ENST00000362750 119 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 RNA5SP88-201ENST00000365560 109 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 Y_RNA.436-201ENST00000384097 102 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 MIR181A2-201ENST00000384863 110 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AL354719.1-201ENST00000406535 843 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC244035.1-201ENST00000430042 390 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 OR2B8P-201ENST00000432841 938 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC129850.1-201ENST00000436203 508 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 MTCYBP39-201ENST00000437562 491 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL360221.1-201ENST00000445989 335 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 RPL31P3-201ENST00000458430 332 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 RNU7-136P-201ENST00000458819 69 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC026410.2-201ENST00000460281 156 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC109486.1-201ENST00000486833 374 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC068724.1-201ENST00000487100 792 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC026412.2-201ENST00000512270 1075 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AL121603.1-201ENST00000553815 142 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP28Q96RU2 OR4H12P-201ENST00000556269 907 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC005951.1-201ENST00000576706 485 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 MIR4637-201ENST00000582405 84 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC146944.4-201ENST00000602697 718 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 BNIP3P11-201ENST00000603878 563 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AL031775.1-201ENST00000607014 887 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC106028.5-201ENST00000610332 395 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC090116.1-201ENST00000615679 446 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 AC009318.4-201ENST00000620496 486 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.34□□□□□ -1.87
USP28Q96RU2 AC139792.2-201ENST00000624218 587 ntBASIC3.34□□□□□ -1.87
USP28Q96RU2 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
USP28Q96RU2 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
USP28Q96RU2 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP28Q96RU2 AL079343.1-201ENST00000572358 1771 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 RNU4-21P-201ENST00000362802 126 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 RNU6-343P-201ENST00000364709 104 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 DYNLT3P1-201ENST00000378574 347 ntBASIC3.33□□□□□ -1.88
USP28Q96RU2 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP28Q96RU2 RNU6-723P-201ENST00000383973 107 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms