Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC108729.1-201ENST00000487812 947 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-1256P-201ENST00000516539 103 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AP003497.1-201ENST00000528472 562 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL132857.1-201ENST00000555180 708 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL133507.1-201ENST00000605269 557 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL161629.2-201ENST00000615347 275 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC010608.3-201ENST00000625048 527 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC084035.1-201ENST00000634543 607 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 FAM35BP-202ENST00000497389 3337 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RNU6-198P-201ENST00000384258 104 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 MIR23A-201ENST00000385245 73 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 MIR1289-1-201ENST00000408836 144 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RN7SKP123-201ENST00000410732 291 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC008850.1-201ENST00000427546 362 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AL590383.1-201ENST00000428602 75 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RPS25P9-201ENST00000435591 252 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RPL7P5-201ENST00000471472 736 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AL135752.1-201ENST00000479477 471 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AP004217.1-201ENST00000480579 346 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC134050.1-201ENST00000495088 933 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RN7SKP43-201ENST00000516173 320 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 SCARNA15.2-201ENST00000516409 127 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 RN7SKP282-201ENST00000516824 299 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC245297.2-201ENST00000610119 565 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AC009039.2-201ENST00000624524 529 ntBASIC3.27□□□□□ -1.89
CCDC43Q96MW1 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC43Q96MW1 AP000526.1-201ENST00000603308 1388 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RNU6-7-201ENST00000364784 107 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RNU6-8-201ENST00000365467 107 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RNU6-637P-201ENST00000384050 107 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 SNORA44-201ENST00000384584 132 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RNU6-114P-201ENST00000384704 105 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 SPA17P1-201ENST00000416656 452 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 MTCYBP38-201ENST00000417160 1123 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RPL7L1P10-201ENST00000427790 463 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AL162389.1-201ENST00000449233 177 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC104563.1-201ENST00000476147 376 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC021382.1-201ENST00000483523 359 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RPS3AP14-201ENST00000483907 780 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC080014.1-201ENST00000496877 1201 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 DSTNP2-201ENST00000504533 515 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 HMGB1P14-201ENST00000557424 591 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC009712.1-201ENST00000564938 316 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 RNU4-5P-201ENST00000607255 135 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AL109620.1-201ENST00000618738 1197 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC006386.1-201ENST00000619436 415 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC022306.3-201ENST00000619930 550 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AC079597.1-201ENST00000624306 508 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AL159972.1-201ENST00000625150 448 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 AL137790.1-201ENST00000634283 177 ntBASIC3.26□□□□□ -1.89
CCDC43Q96MW1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC43Q96MW1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC011477.1-204ENST00000623416 1325 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 RPL5P18-201ENST00000406671 891 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC093151.1-201ENST00000427711 313 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL390023.1-201ENST00000428836 262 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL512844.2-201ENST00000433990 593 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms