Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PPP1R11P2-201ENST00000423543 382 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 COX7BP2-201ENST00000437976 242 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL591503.2-201ENST00000442314 1005 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RPL18AP17-201ENST00000455326 198 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RNU7-23P-201ENST00000459465 62 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RN7SL807P-201ENST00000470923 297 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL135752.1-201ENST00000479477 471 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AP004217.1-201ENST00000480579 346 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC020699.1-201ENST00000505161 445 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC116353.3-201ENST00000511215 249 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 OR5BM1P-201ENST00000512021 366 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 TTC39CP1-201ENST00000512513 755 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 RN7SKP272-201ENST00000516988 232 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 MIR5680-201ENST00000577577 84 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 SRGNP1-201ENST00000603392 451 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL136363.1-201ENST00000605349 337 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 AC007318.2-201ENST00000620999 243 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.01□□□□□ -1.93
VPS39Q96JC1 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
VPS39Q96JC1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS39Q96JC1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
VPS39Q96JC1 MIR22-201ENST00000362190 85 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 Y_RNA.465-201ENST00000384293 102 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 MIR627-201ENST00000384979 97 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3□□□□□ -1.93
VPS39Q96JC1 AC009414.1-201ENST00000427200 443 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 USP9YP11-201ENST00000427537 717 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC093151.1-201ENST00000427711 313 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3□□□□□ -1.93
VPS39Q96JC1 RPL21P2-201ENST00000440049 481 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 RPL21P41-201ENST00000459863 264 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC087588.1-201ENST00000462203 316 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3□□□□□ -1.93
VPS39Q96JC1 SLC25A15P5-201ENST00000508033 253 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3□□□□□ -1.93
VPS39Q96JC1 AC093677.1-201ENST00000514414 678 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 RNU6-1256P-201ENST00000516539 103 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3□□□□□ -1.93
VPS39Q96JC1 AC007536.1-201ENST00000533382 349 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3□□□□□ -1.93
VPS39Q96JC1 AC068135.2-201ENST00000569293 1028 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3□□□□□ -1.93
VPS39Q96JC1 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3□□□□□ -1.93
VPS39Q96JC1 BNIP3P33-201ENST00000598912 569 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC024220.1-201ENST00000603675 484 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC004696.1-201ENST00000614345 607 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 AC002550.2-201ENST00000621246 394 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 MIR4275-201ENST00000636486 87 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3□□□□□ -1.93
VPS39Q96JC1 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3□□□□□ -1.93
VPS39Q96JC1 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3□□□□□ -1.93
VPS39Q96JC1 OR4G2P-202ENST00000641004 1759 ntBASIC3□□□□□ -1.93
VPS39Q96JC1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS39Q96JC1 RNU4-92P-201ENST00000363783 136 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 SNORA36C-201ENST00000384289 132 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 MIR767-201ENST00000390228 109 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 RNA5SP344-201ENST00000411081 104 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 RPL19P1-201ENST00000411635 428 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 Z80107.1-201ENST00000436830 412 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 YWHAZP7-201ENST00000436906 631 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 GAPDHP27-201ENST00000447427 1020 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 RPL21P134-201ENST00000453468 483 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 snoU13.8-201ENST00000458890 104 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 AC108729.1-201ENST00000487812 947 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 XKRY-201ENST00000510392 1100 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 RNU6-583P-201ENST00000516012 92 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS39Q96JC1 MIR4760-201ENST00000585040 80 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 AC068313.1-201ENST00000604028 1008 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 AL158211.4-201ENST00000606988 584 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 MIR7112-201ENST00000616126 65 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 UCA1.1-201ENST00000620952 75 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 AL159972.1-201ENST00000625150 448 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS39Q96JC1 AC007785.2-201ENST00000598627 1916 ntBASIC2.99□□□□□ -1.93
VPS39Q96JC1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VPS39Q96JC1 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
VPS39Q96JC1 RPL23AP29-201ENST00000397284 453 ntBASIC2.98□□□□□ -1.93
VPS39Q96JC1 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms