Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC007547.1-201ENST00000462177 490 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC006512.1-201ENST00000468816 291 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC105417.1-201ENST00000514691 285 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-1170P-201ENST00000515974 106 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SCARNA24.1-201ENST00000516465 137 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SETP2-201ENST00000553886 926 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SCOCP1-201ENST00000554676 349 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 MIR3171-201ENST00000584270 74 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 PSMA6P4-201ENST00000603247 718 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC123786.2-201ENST00000603459 275 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AL355802.3-201ENST00000607571 545 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC005344.1-201ENST00000613391 459 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 MTCO1P9-201ENST00000505577 1534 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 SNORA63C-201ENST00000364578 129 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 NDUFB4P5-201ENST00000415445 361 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AL590233.1-201ENST00000430017 456 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 HMGN2P31-201ENST00000432430 273 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 CYCSP43-201ENST00000438233 310 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 MTND3P16-201ENST00000452205 344 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 PRSS3P4-201ENST00000453323 162 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 PPP1R2P5-201ENST00000457256 603 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 HMGN2P26-201ENST00000463169 339 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC055855.1-201ENST00000489563 579 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC005726.1-201ENST00000494679 427 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC022695.1-201ENST00000522089 237 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC068790.3-201ENST00000602988 553 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC021646.1-201ENST00000605469 484 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 AP004289.2-201ENST00000444413 1457 ntBASIC5.2□□□□□ -1.58
USHBP1Q8N6Y0 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 Y_RNA.259-201ENST00000364619 101 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-1207P-201ENST00000384343 107 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 VN1R36P-201ENST00000414936 291 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC073136.2-201ENST00000417282 849 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 RPL31P45-201ENST00000419532 356 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 RANP8-201ENST00000444720 713 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC002553.2-201ENST00000453217 340 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC130509.1-201ENST00000464158 433 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 GMFBP1-201ENST00000467831 427 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 HSPD1P15-201ENST00000505573 1122 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC110768.1-201ENST00000509222 400 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC104619.4-201ENST00000510773 249 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC114797.1-201ENST00000514003 728 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 OR5BN1P-201ENST00000532955 829 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC026464.5-201ENST00000562497 722 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC007151.1-201ENST00000572774 483 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 SNORD91B-202ENST00000608459 222 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC093838.1-201ENST00000613014 469 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 AC000123.2-201ENST00000623124 461 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 ASNSP3-201ENST00000451989 1306 ntBASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USHBP1Q8N6Y0 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms