Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC146507.1-201ENST00000468335 354 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RN7SL274P-201ENST00000492268 272 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AF131216.2-201ENST00000512316 564 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU2-58P-201ENST00000516403 183 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.3□□□□□ -2.2
USF3Q68DE3 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.3□□□□□ -2.2
USF3Q68DE3 PSMA3P-201ENST00000555485 635 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AC068944.2-201ENST00000610373 403 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-1-201ENST00000383898 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-42P-201ENST00000384165 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-36P-201ENST00000384172 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-4P-201ENST00000384205 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-5P-201ENST00000384238 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-3P-201ENST00000384314 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-2-201ENST00000384627 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-9-201ENST00000384776 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-33P-201ENST00000384793 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AL513185.2-201ENST00000425543 193 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.3□□□□□ -2.2
USF3Q68DE3 PGBD4P3-201ENST00000440731 581 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 Z99714.1-201ENST00000450463 807 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AL121594.1-201ENST00000475906 575 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC092991.1-201ENST00000477176 376 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 OR5H4P-201ENST00000510851 923 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.3□□□□□ -2.2
USF3Q68DE3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.3□□□□□ -2.2
USF3Q68DE3 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
USF3Q68DE3 RNU6-6P-201ENST00000606623 107 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 AL355816.1-201ENST00000607951 118 ntBASIC1.3□□□□□ -2.2
USF3Q68DE3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.29□□□□□ -2.2
USF3Q68DE3 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
USF3Q68DE3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
USF3Q68DE3 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.29□□□□□ -2.2
USF3Q68DE3 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
USF3Q68DE3 SUMO2P12-201ENST00000405924 140 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC1.29□□□□□ -2.2
USF3Q68DE3 AC093084.1-201ENST00000424233 687 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AL358075.3-201ENST00000426289 226 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 TRBV8-1-201ENST00000481590 279 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.29□□□□□ -2.2
USF3Q68DE3 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.29□□□□□ -2.2
USF3Q68DE3 MIR514B-201ENST00000516774 80 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AC113368.1-201ENST00000603736 382 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AC007620.3-201ENST00000608131 497 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AC006023.2-201ENST00000609916 167 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
USF3Q68DE3 AL353770.2-201ENST00000620024 78 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 AC145207.9-201ENST00000623802 325 ntBASIC1.29□□□□□ -2.2
USF3Q68DE3 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
USF3Q68DE3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.29□□□□□ -2.2
USF3Q68DE3 HAUS1P1-201ENST00000505275 832 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC234775.3-201ENST00000564612 656 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 MIR4474-201ENST00000579189 78 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 RMST_6.1-201ENST00000611980 203 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 ZNF209P-201ENST00000593450 2304 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
USF3Q68DE3 U8.1-201ENST00000362843 134 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 Y_RNA.112-201ENST00000363250 102 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 RNU6-234P-201ENST00000365229 104 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 RPL31P2-201ENST00000413849 377 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC1.28□□□□□ -2.2
USF3Q68DE3 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
USF3Q68DE3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC104685.1-201ENST00000502445 371 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC019176.1-201ENST00000518519 225 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AC019131.2-201ENST00000609071 870 ntBASIC1.28□□□□□ -2.2
USF3Q68DE3 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC1.28□□□□□ -2.2
USF3Q68DE3 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
USF3Q68DE3 AL359851.1-201ENST00000569460 4997 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.27□□□□□ -2.21
USF3Q68DE3 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
USF3Q68DE3 SNORA7.2-201ENST00000364446 145 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 SNORD114-22-201ENST00000365423 72 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 HSPE1P1-201ENST00000421494 318 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 UBE2V1P5-201ENST00000440070 405 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USF3Q68DE3 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
USF3Q68DE3 AC096571.1-202ENST00000506634 735 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC1.27□□□□□ -2.21
USF3Q68DE3 AF279873.1-201ENST00000523393 313 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.27□□□□□ -2.21
USF3Q68DE3 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.27□□□□□ -2.21
USF3Q68DE3 AC090897.2-201ENST00000581715 130 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USF3Q68DE3 SNRPGP15-201ENST00000600149 222 ntBASIC1.27□□□□□ -2.21
USF3Q68DE3 AL592494.3-201ENST00000609485 464 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms