Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-714P-201ENST00000516963 103 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 OR5D17P-201ENST00000531492 978 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC245014.2-201ENST00000603689 287 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC246785.4-201ENST00000605374 287 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 RNU6-87P-201ENST00000607561 108 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AC112200.1-201ENST00000625015 234 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 MIR6863-201ENST00000636112 90 ntBASIC4.37□□□□□ -1.71
VPS53Q5VIR6 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS53Q5VIR6 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 GNG5P1-201ENST00000255500 204 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 RNU6-28P-201ENST00000362378 107 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.372-201ENST00000365599 102 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 RNU6-1103P-201ENST00000384150 107 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.450-201ENST00000384198 113 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 SNORA11-201ENST00000408789 128 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 RPS7P15-201ENST00000415804 584 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 MTCO3P12-201ENST00000416718 547 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 BX295541.1-201ENST00000417774 250 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC002075.2-201ENST00000425207 252 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 ARPC3P1-201ENST00000437218 533 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL133547.1-201ENST00000448546 220 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC027673.1-201ENST00000456245 405 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 snoU109.4-201ENST00000458953 143 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 MTND1P3-201ENST00000484956 952 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 SNORA67.7-201ENST00000516664 135 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AP001893.2-201ENST00000526949 202 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AP005205.1-201ENST00000563503 508 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC006504.3-201ENST00000586818 523 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC007687.1-201ENST00000602704 304 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC011468.4-201ENST00000603942 409 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL357078.3-201ENST00000607528 618 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC068880.5-201ENST00000624331 290 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 MIR3688-2-201ENST00000636963 87 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AL732372.2-225ENST00000642124 456 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS53Q5VIR6 AC244517.1-201ENST00000606030 2086 ntBASIC4.36□□□□□ -1.71
VPS53Q5VIR6 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC007685.1-201ENST00000329806 452 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 SNORD9-201ENST00000362566 104 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 RNU6-853P-201ENST00000364306 107 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 Y_RNA.256-201ENST00000364594 104 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL359837.1-201ENST00000381357 287 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL590002.1-201ENST00000406554 418 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 RNU2-8P-201ENST00000410727 190 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 ATP5A1P2-201ENST00000412323 255 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC017079.2-201ENST00000416102 485 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL353777.1-201ENST00000425552 326 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL589872.1-201ENST00000426602 288 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL590233.1-201ENST00000430017 456 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL358934.1-201ENST00000432346 324 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 VN1R34P-201ENST00000447387 883 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC079448.1-201ENST00000449377 373 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AL359385.1-201ENST00000456509 365 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC023598.1-201ENST00000472521 361 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC019235.1-201ENST00000503847 207 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 AC104619.4-201ENST00000510773 249 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS53Q5VIR6 ARL2BPP6-201ENST00000512757 439 ntBASIC4.35□□□□□ -1.71
VPS53Q5VIR6 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms