Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC026801.2-201ENST00000515352 425 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 FABP5P5-201ENST00000515537 406 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 SNORA31.8-201ENST00000516327 108 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC103783.1-201ENST00000520506 373 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AP003181.2-201ENST00000528941 181 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AP000873.5-201ENST00000533906 236 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC091516.1-201ENST00000549191 703 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC090877.1-201ENST00000561418 344 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC068790.3-201ENST00000602988 553 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL365503.1-201ENST00000605247 905 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC098614.4-201ENST00000607601 462 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL355472.4-201ENST00000610233 626 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC012150.2-201ENST00000621300 544 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 CEP170P1-201ENST00000502249 4587 ntBASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PDLIM3Q53GG5 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 TNPO1P3-201ENST00000436471 2662 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 FGF7P2-201ENST00000332473 296 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNY4P34-201ENST00000364779 95 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNU6-359P-201ENST00000365466 108 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 Y_RNA.510-201ENST00000384511 114 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RPL21P17-201ENST00000397467 475 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNU2-43P-201ENST00000410306 190 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNU4-6P-201ENST00000410804 122 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNU6-516P-201ENST00000411381 104 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 HSPE1P12-201ENST00000412576 301 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 SPA17P1-201ENST00000416656 452 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 CCDC58P2-201ENST00000417131 366 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC233728.2-201ENST00000425348 757 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AL022238.1-201ENST00000442557 355 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RPS4XP4-201ENST00000443195 763 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 BX510359.1-201ENST00000456973 237 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 RNU6-711P-201ENST00000517255 106 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC022616.6-201ENST00000520479 119 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 SNRPGP16-201ENST00000533275 226 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC064807.4-201ENST00000607201 407 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC008498.1-201ENST00000613012 531 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 SNORA50A-202ENST00000629536 136 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 AC110994.2-201ENST00000635481 492 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 ZNF807-201ENST00000328088 1707 ntBASIC3.16□□□□□ -1.9
PDLIM3Q53GG5 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
PDLIM3Q53GG5 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
PDLIM3Q53GG5 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
PDLIM3Q53GG5 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.15□□□□□ -1.9
PDLIM3Q53GG5 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 GNG5P1-201ENST00000255500 204 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RNA5SP399-201ENST00000364003 117 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RNU4-75P-201ENST00000364621 146 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RNU6-301P-201ENST00000384277 107 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 MIR199A2-201ENST00000385289 110 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RNU6-882P-201ENST00000391025 103 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RNU1-101P-201ENST00000391171 127 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 EI24P2-201ENST00000397776 1076 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 AL354719.1-201ENST00000406535 843 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 HSPE1P8-201ENST00000406997 288 ntBASIC3.15□□□□□ -1.91
PDLIM3Q53GG5 RPS3AP24-201ENST00000407896 734 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms