Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RPS29P6-201ENST00000438196 145 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 MTND1P31-201ENST00000449206 961 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 NIPA2P5-201ENST00000452282 464 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 HSFY5P-201ENST00000453726 309 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 SNORD121B-201ENST00000458838 81 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 RPL30P9-201ENST00000465586 330 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 RPL23AP11-201ENST00000475260 469 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 RPL9P33-201ENST00000484311 566 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC119751.4-201ENST00000507498 357 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 RNA5SP341-201ENST00000516261 117 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 HPRT1P3-201ENST00000539521 576 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 SETP2-201ENST00000553886 926 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC090695.1-201ENST00000561269 1222 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL353997.4-201ENST00000586196 166 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 BNIP3P22-201ENST00000593399 556 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC091057.2-201ENST00000602594 792 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL133507.1-201ENST00000605269 557 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC004067.1-201ENST00000608733 700 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL162274.2-201ENST00000614406 332 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL355493.4-201ENST00000618530 292 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 MIR3651-201ENST00000630427 90 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC087359.1-201ENST00000508335 1740 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AC005832.2-201ENST00000538921 1430 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC099786.3-201ENST00000565735 1410 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RNU6-851P-201ENST00000384565 107 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RNU6-925P-201ENST00000384629 104 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPL21P75-201ENST00000396599 483 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPL21P28-201ENST00000401418 483 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 MTND4P13-201ENST00000402078 1023 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AL592114.1-201ENST00000403842 483 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 PPP1R11P2-201ENST00000423543 382 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC092648.1-201ENST00000425870 423 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPS20P5-201ENST00000434808 360 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPL21P39-201ENST00000463605 483 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 HSPE1P6-201ENST00000479457 291 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPL21P93-201ENST00000480465 489 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC233702.1-201ENST00000482905 502 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC087190.1-201ENST00000484462 480 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC093591.1-201ENST00000491435 481 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RPL21P16-201ENST00000495531 483 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC083906.5-201ENST00000503722 328 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 UBE2V1P12-201ENST00000503954 474 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 RAC1P5-201ENST00000512182 576 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC026801.2-201ENST00000515352 425 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 NBEAP1-201ENST00000554452 979 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC006504.3-201ENST00000586818 523 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC006270.3-201ENST00000605967 1036 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC245297.2-201ENST00000610119 565 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 AC090132.2-201ENST00000615881 347 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 MIR8057-201ENST00000620957 69 ntBASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC40Q4G0X9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC092593.1-201ENST00000515413 1815 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AL161781.1-201ENST00000354277 403 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 RNU6-359P-201ENST00000365466 108 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 MTCYBP38-201ENST00000417160 1123 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 RPL7P10-201ENST00000417407 739 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 NANOGP5-201ENST00000424456 877 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC234781.2-201ENST00000426370 994 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 ZYG11AP1-201ENST00000430329 837 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 RPS25P9-201ENST00000435591 252 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 LSM1P1-201ENST00000438629 273 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 OR6K1P-201ENST00000456766 971 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 snoU13.22-201ENST00000459428 104 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 MEMO1P3-201ENST00000459811 302 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC098799.2-201ENST00000509466 868 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms