Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 FAM60BP-201ENST00000578364 658 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 MIR3690-201ENST00000580266 75 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 COX6CP3-201ENST00000580869 223 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC009977.1-201ENST00000586015 570 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC012443.1-201ENST00000605605 231 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 RNU6-87P-201ENST00000607561 108 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC131902.3-201ENST00000611767 581 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC093838.1-201ENST00000613014 469 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC100793.4-201ENST00000613683 429 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC092656.1-203ENST00000624134 423 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC010149.2-201ENST00000637608 315 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC119674.1-207ENST00000641355 633 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC009812.4-201ENST00000569134 1805 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AL133383.2-201ENST00000622958 2336 ntBASIC3.6□□□□□ -1.83
COL28A1Q2UY09 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.6□□□□□ -1.83
COL28A1Q2UY09 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 Y_RNA.194-201ENST00000363985 102 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 Y_RNA.436-201ENST00000384097 102 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 SNORA75-201ENST00000384158 137 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RNU4-65P-201ENST00000410473 140 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RNU6-248P-201ENST00000410720 107 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 ATP5A1P2-201ENST00000412323 255 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 BX842559.1-201ENST00000419615 532 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RPL21P66-201ENST00000426566 466 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 MTATP6P4-201ENST00000427725 675 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 MTCO3P5-201ENST00000433620 714 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 VDAC1P3-201ENST00000434069 851 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC083863.1-201ENST00000438811 231 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RPL17P49-201ENST00000443728 411 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RANP8-201ENST00000444720 713 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RPL21P11-201ENST00000461458 483 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 TMED11P-201ENST00000479478 690 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 MTCO2P32-201ENST00000514865 403 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 SNORA70.14-201ENST00000516205 110 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC022695.1-201ENST00000522089 237 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AP003122.4-201ENST00000530980 758 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 RPL21P5-201ENST00000554662 472 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AL157394.1-201ENST00000562983 1224 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC040904.1-201ENST00000590850 223 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC007687.1-201ENST00000602704 304 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC010591.1-201ENST00000603941 649 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC136601.2-201ENST00000604356 474 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 YPEL5P2-201ENST00000605553 359 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC006023.2-201ENST00000609916 167 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC109347.2-201ENST00000610220 349 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 BX664608.1-201ENST00000610519 487 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC010678.1-201ENST00000614118 713 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AL355810.1-201ENST00000614629 552 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AP001506.1-201ENST00000615444 211 ntBASIC3.59□□□□□ -1.83
COL28A1Q2UY09 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
COL28A1Q2UY09 AL353743.1-202ENST00000431724 1695 ntBASIC3.59□□□□□ -1.84
COL28A1Q2UY09 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RNU5A-8P-201ENST00000364102 114 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RNU1-33P-201ENST00000364249 162 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 SNORA40.3-201ENST00000390964 122 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 CCNG1P1-201ENST00000406783 885 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 FCF1P10-201ENST00000407590 479 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RPS3AP3-201ENST00000411933 242 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC007899.1-201ENST00000412776 775 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 PPP1R11P2-201ENST00000423543 382 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC079780.1-201ENST00000428259 207 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC005300.1-201ENST00000428401 373 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 MTND6P13-201ENST00000443510 523 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 TPTE2P5-203ENST00000458118 728 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RNU7-59P-201ENST00000459101 61 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RPL23AP55-201ENST00000498163 452 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC004062.1-201ENST00000509926 645 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 RNA5SP309-201ENST00000516670 106 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms