Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RPL36AP33-201ENST00000450395 310 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 HMGB1P15-201ENST00000453854 435 ntBASIC2.68□□□□□ -1.98
SHHQ15465 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.68□□□□□ -1.98
SHHQ15465 AC008427.1-201ENST00000503102 655 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC091951.3-201ENST00000504093 246 ntBASIC2.68□□□□□ -1.98
SHHQ15465 MTCYBP37-201ENST00000510642 1133 ntBASIC2.68□□□□□ -1.98
SHHQ15465 MTCO3P44-201ENST00000510977 541 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC104986.1-201ENST00000517978 436 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.68□□□□□ -1.98
SHHQ15465 AC100870.1-201ENST00000522035 505 ntBASIC2.68□□□□□ -1.98
SHHQ15465 IGJP1-201ENST00000522682 475 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.68□□□□□ -1.98
SHHQ15465 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.68□□□□□ -1.98
SHHQ15465 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.68□□□□□ -1.98
SHHQ15465 AC074051.3-201ENST00000570238 358 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.68□□□□□ -1.98
SHHQ15465 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.68□□□□□ -1.98
SHHQ15465 AC010620.2-201ENST00000600135 313 ntBASIC2.68□□□□□ -1.98
SHHQ15465 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 AC004908.3-201ENST00000610248 625 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AC069234.5-201ENST00000611056 416 ntBASIC2.68□□□□□ -1.98
SHHQ15465 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
SHHQ15465 AC092650.2-201ENST00000619984 902 ntBASIC2.68□□□□□ -1.98
SHHQ15465 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 AC104985.3-201ENST00000623479 597 ntBASIC2.68□□□□□ -1.98
SHHQ15465 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
SHHQ15465 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.68□□□□□ -1.98
SHHQ15465 ADAM3A-203ENST00000461344 2157 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC093831.2-201ENST00000624393 3427 ntBASIC2.67□□□□□ -1.98
SHHQ15465 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SHHQ15465 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SHHQ15465 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
SHHQ15465 RNU6-263P-201ENST00000363811 107 ntBASIC2.67□□□□□ -1.98
SHHQ15465 RNU6-921P-201ENST00000384361 107 ntBASIC2.67□□□□□ -1.98
SHHQ15465 RNU6-906P-201ENST00000384700 70 ntBASIC2.67□□□□□ -1.98
SHHQ15465 MIR1287-201ENST00000408492 90 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AC008173.1-201ENST00000418901 264 ntBASIC2.67□□□□□ -1.98
SHHQ15465 MTCO2P21-201ENST00000419780 677 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.67□□□□□ -1.98
SHHQ15465 AL009174.1-201ENST00000426577 416 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 MTND2P5-201ENST00000432656 1006 ntBASIC2.67□□□□□ -1.98
SHHQ15465 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AL591719.1-201ENST00000444669 744 ntBASIC2.67□□□□□ -1.98
SHHQ15465 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SHHQ15465 GTF2IP12-201ENST00000456547 356 ntBASIC2.67□□□□□ -1.98
SHHQ15465 snoU13.4-201ENST00000458916 104 ntBASIC2.67□□□□□ -1.98
SHHQ15465 RPL23AP42-201ENST00000471152 471 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.67□□□□□ -1.98
SHHQ15465 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SHHQ15465 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.67□□□□□ -1.98
SHHQ15465 AC105914.1-201ENST00000511798 226 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.67□□□□□ -1.98
SHHQ15465 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.67□□□□□ -1.98
SHHQ15465 AC087894.1-201ENST00000538359 518 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.67□□□□□ -1.98
SHHQ15465 ZNF971P-201ENST00000562068 1249 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.67□□□□□ -1.98
SHHQ15465 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.67□□□□□ -1.98
SHHQ15465 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SHHQ15465 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.67□□□□□ -1.98
SHHQ15465 AC015688.2-201ENST00000584523 262 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.67□□□□□ -1.98
SHHQ15465 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AC234772.3-201ENST00000602277 528 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC107952.2-201ENST00000606048 486 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AL110115.1-201ENST00000614396 364 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC073348.1-201ENST00000623002 331 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC090617.7-201ENST00000623952 126 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AL512643.1-201ENST00000635735 524 ntBASIC2.67□□□□□ -1.98
SHHQ15465 AC132825.7-201ENST00000638744 335 ntBASIC2.67□□□□□ -1.98
SHHQ15465 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SHHQ15465 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SHHQ15465 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.67□□□□□ -1.98
SHHQ15465 AC002543.1-201ENST00000299783 1954 ntBASIC2.67□□□□□ -1.98
SHHQ15465 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
SHHQ15465 RPL9P7-201ENST00000330965 580 ntBASIC2.66□□□□□ -1.98
SHHQ15465 U6.112-201ENST00000384129 70 ntBASIC2.66□□□□□ -1.98
SHHQ15465 MIR525-201ENST00000384978 85 ntBASIC2.66□□□□□ -1.98
SHHQ15465 SNORD65C-201ENST00000390962 71 ntBASIC2.66□□□□□ -1.98
SHHQ15465 AL450338.1-201ENST00000407987 512 ntBASIC2.66□□□□□ -1.98
SHHQ15465 Y_RNA.595-201ENST00000410403 105 ntBASIC2.66□□□□□ -1.98
SHHQ15465 RPL23AP36-201ENST00000413895 458 ntBASIC2.66□□□□□ -1.98
SHHQ15465 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.66□□□□□ -1.98
SHHQ15465 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.66□□□□□ -1.98
SHHQ15465 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.66□□□□□ -1.98
SHHQ15465 AL592437.1-201ENST00000443781 492 ntBASIC2.66□□□□□ -1.98
SHHQ15465 USP9YP25-201ENST00000457708 443 ntBASIC2.66□□□□□ -1.98
SHHQ15465 RN7SL75P-201ENST00000461926 281 ntBASIC2.66□□□□□ -1.98
SHHQ15465 RPL23AP49-201ENST00000492925 468 ntBASIC2.66□□□□□ -1.98
SHHQ15465 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.66□□□□□ -1.98
SHHQ15465 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms