Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC026414.1-201ENST00000504046 698 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC010625.1-201ENST00000511296 403 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA1P55317 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
FOXA1P55317 RNA5SP24-201ENST00000516478 95 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 RNU6-467P-201ENST00000517027 110 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA1P55317 ERHP1-201ENST00000523006 310 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC092451.2-201ENST00000538746 658 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC008127.2-201ENST00000549925 1075 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 EEF1B2P4-201ENST00000551398 348 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA1P55317 MIR3945-201ENST00000581853 98 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 MIR3124-201ENST00000582636 67 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA1P55317 AL583856.2-201ENST00000606298 543 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC013412.1-201ENST00000610687 192 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC080188.3-201ENST00000624842 748 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AC091925.2-201ENST00000625059 256 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
FOXA1P55317 ZNF663P-202ENST00000641770 1131 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AL359693.1-201ENST00000614959 2407 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.13□□□□□ -2.07
FOXA1P55317 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA1P55317 AC006020.1-201ENST00000420179 1854 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 RNU6-492P-201ENST00000363035 104 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 RNU6-1066P-201ENST00000363573 105 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 RNU6-1074P-201ENST00000383995 104 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 SNORA36C-201ENST00000384289 132 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 SNORA67.4-201ENST00000384688 142 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 SNORA40.4-201ENST00000390971 128 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AL445529.1-201ENST00000398713 389 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 RNU2-28P-201ENST00000410457 189 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 RN7SKP284-201ENST00000411002 343 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA1P55317 BTF3P8-201ENST00000414577 526 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 PTP4A1P7-201ENST00000423476 514 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 ZNF736P7Y-201ENST00000425158 820 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC013262.1-201ENST00000426710 252 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 AC092393.1-201ENST00000439625 742 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 RPS29P12-201ENST00000460178 152 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC013828.1-201ENST00000481845 158 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 BOLA3P3-201ENST00000505182 232 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 RPPH1-2P-201ENST00000516688 293 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 RNA5SP82-201ENST00000516707 92 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 AP001804.3-201ENST00000525146 880 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 SNRPGP16-201ENST00000533275 226 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 MTCYBP27-201ENST00000555160 670 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 LARP7P2-201ENST00000575306 125 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 LRRC37A5P-203ENST00000580181 585 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 AP001330.4-201ENST00000604350 154 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC055876.5-201ENST00000605667 259 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC091946.2-201ENST00000606105 291 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.12□□□□□ -2.07
FOXA1P55317 AL355810.1-201ENST00000614629 552 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 AC103798.2-201ENST00000624292 632 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA1P55317 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
FOXA1P55317 GDI2P1-201ENST00000429312 1336 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA1P55317 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA1P55317 MTCO1P23-201ENST00000415223 1526 ntBASIC2.12□□□□□ -2.07
FOXA1P55317 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA1P55317 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA1P55317 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA1P55317 UBE2Q2P1-202ENST00000354771 883 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 RNU6-799P-201ENST00000363567 107 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 RPL7P27-201ENST00000403775 720 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA1P55317 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA1P55317 AC099677.1-201ENST00000420575 175 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 ARF4P4-201ENST00000439608 520 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA1P55317 HMGN1P5-201ENST00000448591 263 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 RPL37P25-201ENST00000507308 276 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC114781.4-201ENST00000513707 639 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA1P55317 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.11□□□□□ -2.07
FOXA1P55317 AC104417.1-201ENST00000523974 751 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC087373.1-201ENST00000524920 491 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA1P55317 AC087894.1-201ENST00000538359 518 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 NBEAP1-201ENST00000554452 979 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC090666.1-201ENST00000578241 445 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AC008507.2-201ENST00000588402 1176 ntBASIC2.11□□□□□ -2.07
FOXA1P55317 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA1P55317 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA1P55317 AC007275.1-201ENST00000621243 671 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms