Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL353748.2-201ENST00000622148 471 ntBASIC3.11□□□□□ -1.91
SOX3P41225 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.11□□□□□ -1.91
SOX3P41225 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SOX3P41225 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
SOX3P41225 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX3P41225 FRG1BP-201ENST00000278882 761 ntBASIC3.1□□□□□ -1.91
SOX3P41225 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SOX3P41225 SNORA31-201ENST00000362607 130 ntBASIC3.1□□□□□ -1.91
SOX3P41225 RNU6-114P-201ENST00000384704 105 ntBASIC3.1□□□□□ -1.91
SOX3P41225 RNY3P10-201ENST00000384764 102 ntBASIC3.1□□□□□ -1.91
SOX3P41225 SNORD115.1-201ENST00000391109 76 ntBASIC3.1□□□□□ -1.91
SOX3P41225 EI24P2-201ENST00000397776 1076 ntBASIC3.1□□□□□ -1.91
SOX3P41225 SNORA11.1-201ENST00000408133 129 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AL356968.1-201ENST00000416622 474 ntBASIC3.1□□□□□ -1.91
SOX3P41225 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC005326.1-201ENST00000429197 123 ntBASIC3.1□□□□□ -1.91
SOX3P41225 RPL21P112-201ENST00000434403 463 ntBASIC3.1□□□□□ -1.91
SOX3P41225 FTH1P1-201ENST00000437933 532 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.1□□□□□ -1.91
SOX3P41225 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.1□□□□□ -1.91
SOX3P41225 AL360221.1-201ENST00000445989 335 ntBASIC3.1□□□□□ -1.91
SOX3P41225 SNRPGP9-201ENST00000456025 225 ntBASIC3.1□□□□□ -1.91
SOX3P41225 SNRPGP3-201ENST00000469405 227 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC010285.1-201ENST00000470580 392 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC093278.1-201ENST00000494700 600 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX3P41225 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 AF131216.2-201ENST00000512316 564 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC091965.2-201ENST00000512324 613 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SOX3P41225 APOOP4-201ENST00000513530 597 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 Y_RNA.695-201ENST00000516715 107 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC103783.1-201ENST00000520506 373 ntBASIC3.1□□□□□ -1.91
SOX3P41225 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.1□□□□□ -1.91
SOX3P41225 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.1□□□□□ -1.91
SOX3P41225 UBE2L4-201ENST00000587688 464 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC245008.1-201ENST00000608123 476 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX3P41225 AC025594.3-201ENST00000613068 790 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC104010.1-201ENST00000616889 150 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AL158801.5-201ENST00000623123 465 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC079597.1-201ENST00000624306 508 ntBASIC3.1□□□□□ -1.91
SOX3P41225 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SOX3P41225 AL133383.2-201ENST00000622958 2336 ntBASIC3.1□□□□□ -1.91
SOX3P41225 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.1□□□□□ -1.91
SOX3P41225 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX3P41225 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SOX3P41225 GABPAP-201ENST00000419271 1356 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AL390237.1-201ENST00000404226 1415 ntBASIC3.1□□□□□ -1.91
SOX3P41225 AC011460.1-201ENST00000636268 1834 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AP001350.1-201ENST00000601906 1524 ntBASIC3.09□□□□□ -1.91
SOX3P41225 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 SRP72P2-201ENST00000344851 1979 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC092125.1-201ENST00000562568 1995 ntBASIC3.09□□□□□ -1.91
SOX3P41225 Z83843.1-201ENST00000604070 3685 ntBASIC3.09□□□□□ -1.91
SOX3P41225 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SOX3P41225 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SOX3P41225 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SOX3P41225 Y_RNA.46-201ENST00000362695 102 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RNA5SP189-201ENST00000364920 115 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RNU6-533P-201ENST00000384144 107 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RNU6-1181P-201ENST00000384191 106 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RNU6-809P-201ENST00000384461 107 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RPS20P2-201ENST00000402520 389 ntBASIC3.09□□□□□ -1.91
SOX3P41225 RNA5SP120-201ENST00000410900 112 ntBASIC3.09□□□□□ -1.91
SOX3P41225 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 AC007390.1-201ENST00000415722 356 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 MTND1P28-201ENST00000435623 950 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX3P41225 ST13P20-201ENST00000447996 1065 ntBASIC3.09□□□□□ -1.91
SOX3P41225 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX3P41225 BX510359.1-201ENST00000456973 237 ntBASIC3.09□□□□□ -1.91
SOX3P41225 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 RPL23AP67-201ENST00000465341 474 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SOX3P41225 RPL21P13-201ENST00000488305 481 ntBASIC3.09□□□□□ -1.91
SOX3P41225 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.09□□□□□ -1.91
SOX3P41225 AC112204.1-201ENST00000502591 103 ntBASIC3.09□□□□□ -1.91
SOX3P41225 PHBP14-201ENST00000512887 367 ntBASIC3.09□□□□□ -1.91
SOX3P41225 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SOX3P41225 AP004242.1-201ENST00000533701 349 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.09□□□□□ -1.91
SOX3P41225 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX3P41225 AC005476.1-201ENST00000554427 397 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC060771.1-201ENST00000582031 164 ntBASIC3.09□□□□□ -1.91
SOX3P41225 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.09□□□□□ -1.91
SOX3P41225 MIR548AB-201ENST00000584917 84 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms