Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PTPN4P29074 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PTPN4P29074 U3.26-201ENST00000391236 204 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 MIR887-201ENST00000401258 79 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AL138885.1-201ENST00000405921 675 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 SNORD88.1-201ENST00000408684 91 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PTPN4P29074 XKRYP1-201ENST00000423438 492 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 XKRYP2-201ENST00000432915 492 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.06□□□□□ -1.92
PTPN4P29074 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PTPN4P29074 AL359385.1-201ENST00000456509 365 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.06□□□□□ -1.92
PTPN4P29074 RN7SL863P-201ENST00000462370 296 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 RPL31P50-201ENST00000471002 296 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 RPL7P18-201ENST00000478965 734 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 RPS3AP14-201ENST00000483907 780 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC011825.1-201ENST00000484967 388 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC104090.1-201ENST00000506341 1171 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC024589.1-201ENST00000512207 263 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.06□□□□□ -1.92
PTPN4P29074 MRPS36P3-201ENST00000519284 130 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 COX6CP8-201ENST00000522620 226 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 EEF1A1P37-201ENST00000522748 715 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC005832.2-201ENST00000538921 1430 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 OR6C7P-201ENST00000547875 934 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC083760.1-201ENST00000589621 670 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 GLUD1P4-201ENST00000590914 418 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC004832.5-201ENST00000608677 401 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.06□□□□□ -1.92
PTPN4P29074 AP002782.1-201ENST00000623107 614 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 AC011477.1-204ENST00000623416 1325 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 MIR6733-201ENST00000635723 61 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
PTPN4P29074 AC091564.4-201ENST00000533934 2194 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
PTPN4P29074 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
PTPN4P29074 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTPN4P29074 AL122016.1-201ENST00000403365 367 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 SNORA11.2-201ENST00000408318 127 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 USP9YP33-201ENST00000412220 421 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AL008987.1-201ENST00000415528 237 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 HIGD1AP15-201ENST00000416198 280 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 RPS24P7-201ENST00000416921 246 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.05□□□□□ -1.92
PTPN4P29074 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.05□□□□□ -1.92
PTPN4P29074 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 AL353705.1-201ENST00000433468 480 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 USP9YP35-201ENST00000435696 412 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 NDUFB4P6-201ENST00000436819 366 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 RSL24D1P3-201ENST00000449255 495 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 PAXBP1P1-201ENST00000449315 447 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.05□□□□□ -1.92
PTPN4P29074 RPL21P41-201ENST00000459863 264 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 RPS29P12-201ENST00000460178 152 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 RN7SL499P-201ENST00000481141 276 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC119751.5-201ENST00000514077 770 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 RN7SKP282-201ENST00000516824 299 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.05□□□□□ -1.92
PTPN4P29074 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.05□□□□□ -1.92
PTPN4P29074 OR7K1P-201ENST00000546439 926 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 AC009097.3-201ENST00000563557 1018 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.05□□□□□ -1.92
PTPN4P29074 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.05□□□□□ -1.92
PTPN4P29074 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.05□□□□□ -1.92
PTPN4P29074 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.05□□□□□ -1.92
PTPN4P29074 AL451007.1-201ENST00000595491 289 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC022022.2-201ENST00000602989 360 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 NUTF2P8-201ENST00000604593 363 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC025588.2-201ENST00000604851 466 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC138932.5-201ENST00000617759 563 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AP000484.1-201ENST00000620067 1252 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 AC002550.2-201ENST00000621246 394 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
PTPN4P29074 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTPN4P29074 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTPN4P29074 AC009812.4-201ENST00000569134 1805 ntBASIC3.05□□□□□ -1.92
PTPN4P29074 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTPN4P29074 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
PTPN4P29074 AL022578.1-201ENST00000439330 1433 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 FAM133CP-201ENST00000332869 704 ntBASIC3.04□□□□□ -1.92
PTPN4P29074 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PTPN4P29074 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms