Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.598-201ENST00000410480 95 ntBASIC3.39□□□□□ -1.87
MSH3P20585 Y_RNA.608-201ENST00000410647 95 ntBASIC3.39□□□□□ -1.87
MSH3P20585 RNU2-16P-201ENST00000410712 136 ntBASIC3.39□□□□□ -1.87
MSH3P20585 RNU4-78P-201ENST00000410940 126 ntBASIC3.39□□□□□ -1.87
MSH3P20585 HMGN1P14-201ENST00000412459 517 ntBASIC3.39□□□□□ -1.87
MSH3P20585 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSH3P20585 AC017079.2-201ENST00000416102 485 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.39□□□□□ -1.87
MSH3P20585 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.39□□□□□ -1.87
MSH3P20585 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.39□□□□□ -1.87
MSH3P20585 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 Z82190.1-201ENST00000454534 490 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 TPT1P7-201ENST00000458300 517 ntBASIC3.39□□□□□ -1.87
MSH3P20585 RPS4XP2-201ENST00000458402 793 ntBASIC3.39□□□□□ -1.87
MSH3P20585 snoU13.8-201ENST00000458890 104 ntBASIC3.39□□□□□ -1.87
MSH3P20585 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSH3P20585 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.39□□□□□ -1.87
MSH3P20585 FCF1P8-201ENST00000510322 597 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AC022880.1-201ENST00000534017 973 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.39□□□□□ -1.87
MSH3P20585 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.39□□□□□ -1.87
MSH3P20585 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.39□□□□□ -1.87
MSH3P20585 SEPT7P9-203ENST00000604116 343 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.39□□□□□ -1.87
MSH3P20585 MIR6075-201ENST00000620782 95 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AC084035.1-201ENST00000634543 607 ntBASIC3.39□□□□□ -1.87
MSH3P20585 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.39□□□□□ -1.87
MSH3P20585 AL513302.2-201ENST00000562313 1842 ntBASIC3.39□□□□□ -1.87
MSH3P20585 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.39□□□□□ -1.87
MSH3P20585 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH3P20585 AC092326.2-201ENST00000624772 1561 ntBASIC3.38□□□□□ -1.87
MSH3P20585 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 MIR30E-201ENST00000362104 92 ntBASIC3.38□□□□□ -1.87
MSH3P20585 RNA5SP119-201ENST00000362715 117 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AP002088.1-201ENST00000382740 395 ntBASIC3.38□□□□□ -1.87
MSH3P20585 RNU6-629P-201ENST00000384061 103 ntBASIC3.38□□□□□ -1.87
MSH3P20585 Y_RNA.505-201ENST00000384489 102 ntBASIC3.38□□□□□ -1.87
MSH3P20585 Y_RNA.548-201ENST00000384656 105 ntBASIC3.38□□□□□ -1.87
MSH3P20585 MIR7-3-201ENST00000384898 110 ntBASIC3.38□□□□□ -1.87
MSH3P20585 SNORA11-201ENST00000408789 128 ntBASIC3.38□□□□□ -1.87
MSH3P20585 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH3P20585 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH3P20585 RPL21P112-201ENST00000434403 463 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH3P20585 ATP5C1P1-201ENST00000441945 895 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AL022238.1-201ENST00000442557 355 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH3P20585 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH3P20585 AL033528.1-201ENST00000453780 140 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH3P20585 RPL21P10-201ENST00000463521 490 ntBASIC3.38□□□□□ -1.87
MSH3P20585 LARP1BP2-201ENST00000486594 519 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH3P20585 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.38□□□□□ -1.87
MSH3P20585 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 AP004371.1-201ENST00000525240 214 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH3P20585 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.38□□□□□ -1.87
MSH3P20585 SETP7-201ENST00000552169 453 ntBASIC3.38□□□□□ -1.87
MSH3P20585 ZNF519P3-201ENST00000557158 1032 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH3P20585 MIR4528-201ENST00000577763 90 ntBASIC3.38□□□□□ -1.87
MSH3P20585 MIR4444-1-201ENST00000581696 74 ntBASIC3.38□□□□□ -1.87
MSH3P20585 MIR4444-2-201ENST00000584390 74 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC019176.2-201ENST00000611579 315 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AL355365.1-201ENST00000616480 294 ntBASIC3.38□□□□□ -1.87
MSH3P20585 AC138932.5-201ENST00000617759 563 ntBASIC3.38□□□□□ -1.87
MSH3P20585 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.38□□□□□ -1.87
MSH3P20585 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.38□□□□□ -1.87
MSH3P20585 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSH3P20585 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH3P20585 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH3P20585 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 Y_RNA.46-201ENST00000362695 102 ntBASIC3.37□□□□□ -1.87
MSH3P20585 RNU6-97P-201ENST00000363387 104 ntBASIC3.37□□□□□ -1.87
MSH3P20585 SNORA40.3-201ENST00000390964 122 ntBASIC3.37□□□□□ -1.87
MSH3P20585 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 RPS20P2-201ENST00000402520 389 ntBASIC3.37□□□□□ -1.87
MSH3P20585 RN7SKP111-201ENST00000410349 271 ntBASIC3.37□□□□□ -1.87
MSH3P20585 RNU6-248P-201ENST00000410720 107 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC126124.2-201ENST00000413542 321 ntBASIC3.37□□□□□ -1.87
MSH3P20585 Z99755.1-201ENST00000414048 380 ntBASIC3.37□□□□□ -1.87
MSH3P20585 RPS7P15-201ENST00000415804 584 ntBASIC3.37□□□□□ -1.87
MSH3P20585 BX890604.2-201ENST00000427883 474 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 YME1L1P1-201ENST00000429435 297 ntBASIC3.37□□□□□ -1.87
MSH3P20585 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 BX679664.1-201ENST00000434429 253 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms