Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.53□□□□□ -2.16
COL6A3P12111 AP000873.1-201ENST00000463987 400 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 MTND5P21-201ENST00000531961 522 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AC084373.1-201ENST00000603311 235 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.53□□□□□ -2.16
COL6A3P12111 AC123912.3-201ENST00000600907 1367 ntBASIC1.53□□□□□ -2.17
COL6A3P12111 METTL21EP-201ENST00000298105 713 ntBASIC1.53□□□□□ -2.17
COL6A3P12111 MTCYBP18-201ENST00000501056 747 ntBASIC1.53□□□□□ -2.17
COL6A3P12111 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.53□□□□□ -2.17
COL6A3P12111 AC087241.2-201ENST00000535801 324 ntBASIC1.53□□□□□ -2.17
COL6A3P12111 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.53□□□□□ -2.17
COL6A3P12111 AC092954.1-201ENST00000609121 445 ntBASIC1.53□□□□□ -2.17
COL6A3P12111 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.53□□□□□ -2.17
COL6A3P12111 Y_RNA.85-201ENST00000363014 111 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 HMGN1P8-201ENST00000463578 288 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL6A3P12111 AC126177.8-201ENST00000618339 1015 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
COL6A3P12111 AL596028.1-201ENST00000326971 197 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 RNU6-716P-201ENST00000365621 103 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 HMGN1P14-201ENST00000412459 517 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.52□□□□□ -2.17
COL6A3P12111 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 AC023813.2-201ENST00000564321 469 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 AC097468.3-201ENST00000607956 456 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 VIS1.1-201ENST00000610517 203 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
COL6A3P12111 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.52□□□□□ -2.17
COL6A3P12111 AL021368.2-201ENST00000606125 5352 ntBASIC1.52□□□□□ -2.17
COL6A3P12111 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
COL6A3P12111 SNORA16.1-201ENST00000364597 132 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 BTBD10P2-201ENST00000404779 676 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.51□□□□□ -2.17
COL6A3P12111 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.51□□□□□ -2.17
COL6A3P12111 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.51□□□□□ -2.17
COL6A3P12111 MTND2P9-201ENST00000422293 931 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AC090453.1-201ENST00000495560 436 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 RNU1-92P-201ENST00000517017 135 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC1.51□□□□□ -2.17
COL6A3P12111 MIR4419B-201ENST00000577260 68 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.51□□□□□ -2.17
COL6A3P12111 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
COL6A3P12111 AL096701.2-201ENST00000416920 238 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 HIGD1AP11-201ENST00000438361 280 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AC090255.1-201ENST00000495779 349 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 RNU6-113P-201ENST00000516653 101 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AC104986.1-201ENST00000517978 436 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 AC084851.1-201ENST00000529105 249 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.51□□□□□ -2.17
COL6A3P12111 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.51□□□□□ -2.17
COL6A3P12111 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 AC019155.1-201ENST00000382242 574 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
COL6A3P12111 RPL26P37-201ENST00000411983 438 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 MTND1P23-201ENST00000416931 372 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 CFTRP1-201ENST00000456646 183 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
COL6A3P12111 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.51□□□□□ -2.17
COL6A3P12111 uc_338.12-201ENST00000616344 181 ntBASIC1.51□□□□□ -2.17
COL6A3P12111 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.51□□□□□ -2.17
COL6A3P12111 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.51□□□□□ -2.17
COL6A3P12111 AL136164.4-201ENST00000625013 2135 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.5□□□□□ -2.17
COL6A3P12111 AC007390.1-201ENST00000415722 356 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.5□□□□□ -2.17
COL6A3P12111 FNDC3CP-201ENST00000420795 1155 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.5□□□□□ -2.17
COL6A3P12111 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.5□□□□□ -2.17
COL6A3P12111 CBX3P8-201ENST00000532412 525 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.5□□□□□ -2.17
COL6A3P12111 MZT1P2-201ENST00000604387 248 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.5□□□□□ -2.17
COL6A3P12111 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
COL6A3P12111 RNU6-72P-201ENST00000384285 79 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AC018630.2-202ENST00000422992 927 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 HMGN2P19-201ENST00000425149 265 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.5□□□□□ -2.17
COL6A3P12111 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.5□□□□□ -2.17
COL6A3P12111 AC010265.1-201ENST00000513509 211 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.5□□□□□ -2.17
COL6A3P12111 AC067852.7-201ENST00000623270 535 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 AL121594.5-201ENST00000631724 573 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 PABPC1P9-201ENST00000426076 1612 ntBASIC1.5□□□□□ -2.17
COL6A3P12111 XIAPP3-201ENST00000312918 795 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 MIR409-201ENST00000362237 79 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 RNA5SP384-201ENST00000516615 116 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AC084364.2-201ENST00000546924 395 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 PRELID2P1-201ENST00000552837 301 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AL137072.1-201ENST00000603444 466 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AL590095.2-201ENST00000604136 117 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.49□□□□□ -2.17
COL6A3P12111 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.49□□□□□ -2.17
COL6A3P12111 RNA5SP354-201ENST00000391247 136 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 CST2P1-201ENST00000425770 87 ntBASIC1.49□□□□□ -2.17
COL6A3P12111 AC073901.1-201ENST00000462471 408 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms