Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.24□□□□□ -1.73
COL3A1P02461 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.24□□□□□ -1.73
COL3A1P02461 AC025678.1-201ENST00000567861 338 ntBASIC4.24□□□□□ -1.73
COL3A1P02461 UBL5P2-201ENST00000583788 219 ntBASIC4.24□□□□□ -1.73
COL3A1P02461 AC018690.1-201ENST00000608144 626 ntBASIC4.24□□□□□ -1.73
COL3A1P02461 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.24□□□□□ -1.73
COL3A1P02461 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL3A1P02461 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL3A1P02461 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 RNU6-723P-201ENST00000383973 107 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 TMSB4XP8-201ENST00000402089 135 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 RNU4-55P-201ENST00000410731 137 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC068533.2-201ENST00000411872 306 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 TMSB4XP6-201ENST00000415187 135 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 MTND3P17-201ENST00000416968 344 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.23□□□□□ -1.73
COL3A1P02461 TMSB4XP1-201ENST00000424567 135 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.23□□□□□ -1.73
COL3A1P02461 Z93242.1-201ENST00000427102 353 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 BX890604.2-201ENST00000427883 474 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 RPL37P21-201ENST00000435890 276 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 USP9YP12-201ENST00000450481 570 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 SNRPGP6-201ENST00000451124 220 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 DNAJC19P8-201ENST00000452887 259 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC008481.1-201ENST00000463278 396 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 RPS29P25-201ENST00000481709 171 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 HMGB1P29-201ENST00000505659 499 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 SNX5P1-201ENST00000505757 1041 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 FGF7P4-201ENST00000509595 295 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AF131216.2-201ENST00000512316 564 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC008885.1-201ENST00000514930 301 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 RNU6-416P-201ENST00000516265 103 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 SNORA18.6-201ENST00000516792 115 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.23□□□□□ -1.73
COL3A1P02461 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.23□□□□□ -1.73
COL3A1P02461 AP003072.1-201ENST00000531740 145 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.23□□□□□ -1.73
COL3A1P02461 AL512310.1-201ENST00000548639 172 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.23□□□□□ -1.73
COL3A1P02461 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.23□□□□□ -1.73
COL3A1P02461 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.23□□□□□ -1.73
COL3A1P02461 uc_338.1-201ENST00000612113 180 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AC018692.3-201ENST00000623929 123 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.23□□□□□ -1.73
COL3A1P02461 AC093591.3-201ENST00000634516 308 ntBASIC4.23□□□□□ -1.73
COL3A1P02461 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
COL3A1P02461 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL3A1P02461 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL3A1P02461 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL3A1P02461 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL3A1P02461 RNU6-1066P-201ENST00000363573 105 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
COL3A1P02461 RNU6-452P-201ENST00000384406 107 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 MIR16-1-201ENST00000385271 89 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 RNU6-780P-201ENST00000391030 104 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL3A1P02461 NACAP7-201ENST00000407371 609 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.22□□□□□ -1.73
COL3A1P02461 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.22□□□□□ -1.73
COL3A1P02461 AL009174.1-201ENST00000426577 416 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.22□□□□□ -1.73
COL3A1P02461 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.22□□□□□ -1.73
COL3A1P02461 CST9LP2-201ENST00000437612 320 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 RPS26P30-201ENST00000443431 335 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.22□□□□□ -1.73
COL3A1P02461 COX6CP18-201ENST00000448769 222 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 RPL37P3-201ENST00000456825 293 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.22□□□□□ -1.73
COL3A1P02461 AC026412.2-201ENST00000512270 1075 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.22□□□□□ -1.73
COL3A1P02461 RNU6-327P-201ENST00000516270 127 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 IGJP1-201ENST00000522682 475 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AC004024.1-201ENST00000549244 247 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AL121603.1-201ENST00000553815 142 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AL512360.1-201ENST00000555346 234 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AC136618.2-201ENST00000575091 400 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 AL596327.1-201ENST00000603629 213 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 AC013553.2-201ENST00000604244 589 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 BNIP3P10-201ENST00000605360 577 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 AC068880.5-201ENST00000624331 290 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 U6.107-201ENST00000637108 79 ntBASIC4.22□□□□□ -1.73
COL3A1P02461 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.22□□□□□ -1.73
COL3A1P02461 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.22□□□□□ -1.73
COL3A1P02461 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL3A1P02461 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms