Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC107081.1-201ENST00000414975 361 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 VPS26BP1-201ENST00000417155 755 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AL158071.1-201ENST00000430315 461 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 MTCO3P45-201ENST00000443036 613 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 PRDX3P3-201ENST00000447765 522 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 RBMY2UP-201ENST00000453474 324 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 RNU7-125P-201ENST00000458760 62 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 RPS20P20-201ENST00000460498 340 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC010401.1-201ENST00000463867 348 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC084357.1-201ENST00000473404 255 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC068587.2-201ENST00000478386 781 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC055855.1-201ENST00000489563 579 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AP006245.1-201ENST00000522549 120 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 OR5G4P-201ENST00000525251 760 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC007458.1-201ENST00000542812 373 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC004024.1-201ENST00000549244 247 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC145350.1-201ENST00000567426 208 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC005951.2-201ENST00000576282 495 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AF038458.1-201ENST00000588406 262 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AP000403.1-201ENST00000603349 851 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC013553.2-201ENST00000604244 589 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AL138880.2-201ENST00000616214 239 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC004777.1-201ENST00000624317 287 ntBASIC3.58□□□□□ -1.84
VPS28Q9UK41 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.58□□□□□ -1.84
VPS28Q9UK41 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS28Q9UK41 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS28Q9UK41 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS28Q9UK41 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS28Q9UK41 RNU1-39P-201ENST00000383897 165 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 MIR490-201ENST00000384865 128 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AL159987.2-201ENST00000432754 307 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 RPL7P34-201ENST00000433316 712 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 ART2BP-201ENST00000453501 499 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 MTCO1P42-201ENST00000457379 726 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC008481.1-201ENST00000463278 396 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 BZW1P2-201ENST00000473537 826 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC005178.1-201ENST00000508392 440 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC006445.2-201ENST00000510061 472 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 CDC42P4-201ENST00000510507 563 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC116347.2-201ENST00000514912 523 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 SNORD59.2-201ENST00000516873 68 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 DUXAP5-201ENST00000529668 529 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS28Q9UK41 AL031985.2-201ENST00000600955 480 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 ELOCP35-201ENST00000604289 336 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 OR10AB1P-201ENST00000609613 938 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 SDR42E1P2-201ENST00000614861 481 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 AC010133.1-201ENST00000615809 842 ntBASIC3.57□□□□□ -1.84
VPS28Q9UK41 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS28Q9UK41 CCNG1P1-201ENST00000406783 885 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 RNU4-72P-201ENST00000410754 173 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC092447.3-201ENST00000426027 686 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 RPS6P15-201ENST00000431996 751 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 ELOCP30-201ENST00000447108 299 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AL133217.1-201ENST00000450980 425 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC020893.1-201ENST00000502452 580 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC112198.1-201ENST00000505369 1220 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 TTC39CP1-201ENST00000512513 755 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 NDUFB9P3-201ENST00000521269 501 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC022146.1-201ENST00000595307 847 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms