Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MTND4P16-201ENST00000466108 1367 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL513302.2-201ENST00000562313 1842 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 CCT4P2-201ENST00000233836 1548 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 RNU4-91P-201ENST00000364778 135 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL136372.1-201ENST00000403060 228 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 SNORA11.2-201ENST00000408318 127 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 HMGN1P24-201ENST00000412282 298 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 MTCO1P39-201ENST00000426148 480 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC098826.1-201ENST00000433943 471 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 SETP5-201ENST00000437270 562 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 FAM103A2P-201ENST00000444122 354 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 RPL7P36-201ENST00000444633 681 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC021146.1-201ENST00000511202 716 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC022483.1-201ENST00000514020 567 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC107934.2-201ENST00000518653 310 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC013828.2-201ENST00000532487 235 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 MIR5004-201ENST00000579078 107 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 MIR4325-201ENST00000583049 90 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC110760.3-201ENST00000598794 467 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AL022161.1-201ENST00000604390 213 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC090425.2-201ENST00000608818 501 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 U7.8-201ENST00000619968 63 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 AC026422.1-201ENST00000623961 452 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 TAB3P1-202ENST00000452645 1634 ntBASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC3Q9BQI4 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RPS4XP5-202ENST00000449995 1334 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RNU6-1074P-201ENST00000383995 104 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SNORD116-2-201ENST00000384274 95 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 Y_RNA.548-201ENST00000384656 105 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SNORD116-6-201ENST00000384711 96 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 MIR135A2-201ENST00000384854 100 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SNORD115.1-201ENST00000391109 76 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL357075.1-201ENST00000404107 726 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC126124.2-201ENST00000413542 321 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 Z99755.1-201ENST00000414048 380 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL353678.1-201ENST00000422735 741 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC244035.1-201ENST00000430042 390 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL158071.1-201ENST00000430315 461 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 UBE2D3P4-201ENST00000441973 436 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RPS4XP13-201ENST00000483219 789 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RNU1-103P-201ENST00000516502 125 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RNU6-1073P-201ENST00000517182 106 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AP006245.1-201ENST00000522549 120 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 MIR4738-201ENST00000579134 87 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC067852.3-201ENST00000589177 561 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 PRELID3BP8-201ENST00000604148 295 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC135507.2-201ENST00000612443 309 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL162274.2-201ENST00000614406 332 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AL356266.1-201ENST00000623311 483 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC007494.3-201ENST00000624660 743 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SCARNA15.3-201ENST00000626315 122 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms