Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC099654.9-201ENST00000637055 678 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 GABRG2-229ENST00000641017 3628 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC091564.4-201ENST00000533934 2194 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AL161781.1-201ENST00000354277 403 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 SNORA36C-201ENST00000384289 132 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR514A1-201ENST00000385133 98 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 BMS1P22-201ENST00000414726 313 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 NDUFB4P7-201ENST00000423198 363 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 ZYG11AP1-201ENST00000430329 837 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 RPS20P5-201ENST00000434808 360 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 TAAR7P-201ENST00000436141 242 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AL031313.1-201ENST00000448435 256 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MTND2P24-201ENST00000453434 806 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 RPL21P134-201ENST00000453468 483 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 RPS29P12-201ENST00000460178 152 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC083906.5-201ENST00000503722 328 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 TTC39CP1-201ENST00000512513 755 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 RNA5SP385-201ENST00000515947 110 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR4509-3-201ENST00000578671 94 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR4509-2-201ENST00000583920 94 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR4506-201ENST00000584693 77 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AC006270.3-201ENST00000605967 1036 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MIR4509-1-201ENST00000618224 94 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 AP000676.4-201ENST00000624659 623 ntBASIC3.3□□□□□ -1.88
CCDC43Q96MW1 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.3□□□□□ -1.88
CCDC43Q96MW1 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 RNU4-68P-201ENST00000364314 141 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 RNU6-1078P-201ENST00000364522 103 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 EEF1A1P41-201ENST00000414667 207 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AL354692.1-201ENST00000423044 315 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 HMGB1P36-201ENST00000487709 576 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 ARL4AP2-201ENST00000507378 601 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC021146.8-201ENST00000507455 733 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 RAC1P5-201ENST00000512182 576 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 OR5G4P-201ENST00000525251 760 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC034268.2-201ENST00000571784 482 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AL353997.4-201ENST00000586196 166 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC091057.3-201ENST00000602684 733 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC015871.2-201ENST00000603605 948 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC068313.1-201ENST00000604028 1008 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC093732.2-201ENST00000607950 274 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC135507.2-201ENST00000612443 309 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AL603758.1-201ENST00000618654 241 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 OR5H6-203ENST00000642105 978 ntBASIC3.29□□□□□ -1.88
CCDC43Q96MW1 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC43Q96MW1 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 API5P2-201ENST00000397055 1498 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC108206.1-201ENST00000570186 4159 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-289P-201ENST00000364093 107 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-270P-201ENST00000364131 105 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-359P-201ENST00000365466 108 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-851P-201ENST00000384565 107 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 UBA52P6-201ENST00000399822 382 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL356421.1-201ENST00000403255 413 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 USP9YP33-201ENST00000412220 421 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL645937.1-202ENST00000421799 937 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AL513175.2-201ENST00000422071 443 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 USP9YP35-201ENST00000435696 412 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RPL23AP58-201ENST00000440453 469 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 EEF1E1P1-201ENST00000446998 430 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 GAPDHP27-201ENST00000447427 1020 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC43Q96MW1 RNU6-420P-201ENST00000458780 107 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 MEMO1P3-201ENST00000459811 302 ntBASIC3.28□□□□□ -1.88
CCDC43Q96MW1 S100A11P2-201ENST00000467589 312 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms