Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RNU6-463P-201ENST00000384340 107 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.485-201ENST00000384395 102 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL109941.1-201ENST00000401925 229 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL022722.2-201ENST00000402519 180 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RN7SKP177-201ENST00000410567 355 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC011933.1-201ENST00000413334 321 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 FTH1P6-201ENST00000430768 320 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 MYL8P-204ENST00000431574 518 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL133396.1-201ENST00000432048 687 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL353997.1-201ENST00000432936 108 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AP000873.1-201ENST00000463987 400 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RN7SL547P-201ENST00000490793 290 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ACA59.1-201ENST00000515966 143 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RNA5SP362-201ENST00000516048 118 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RNU6-764P-201ENST00000516396 105 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL049839.1-201ENST00000556151 657 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC008269.2-201ENST00000561915 1105 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 MIR3671-201ENST00000580455 88 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AL589674.2-201ENST00000604304 337 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 MIR6886-201ENST00000619864 61 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RPL9P7-201ENST00000330965 580 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 SNORD14B-201ENST00000364533 90 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNU6-1317P-201ENST00000364582 104 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNU6-827P-201ENST00000365553 106 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 MIR607-201ENST00000385241 96 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNA5SP487-201ENST00000410186 122 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC079355.1-201ENST00000421770 223 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AL627311.1-201ENST00000431514 115 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC092573.2-201ENST00000434546 243 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AL513043.1-201ENST00000439124 535 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 GAPDHP25-201ENST00000447061 1001 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 snoU109.2-201ENST00000459316 135 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNU6-1037P-201ENST00000459571 107 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RPL9P32-201ENST00000464118 620 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RPL9P9-202ENST00000466501 579 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AP000797.2-201ENST00000475768 606 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 S100A11P1-201ENST00000477525 312 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 FO393415.2-201ENST00000480085 343 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RPL21P13-201ENST00000488305 481 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RN7SL184P-201ENST00000488308 297 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC015911.1-201ENST00000495111 156 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNU6-572P-201ENST00000516724 80 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TRAV28-201ENST00000557548 323 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC109583.2-201ENST00000617367 129 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AL023881.1-201ENST00000621088 301 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 7SK.10-201ENST00000621414 298 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC007785.2-201ENST00000598627 1916 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms