Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AL355836.1-201ENST00000555951 870 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 TRAV28-201ENST00000557548 323 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AL355877.2-201ENST00000603670 358 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AL445264.1-201ENST00000621719 171 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AL445984.1-201ENST00000637834 659 ntBASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.95□□□□□ -1.94
ZNF540Q8NDQ6 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 RNU1-70P-201ENST00000362618 164 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 RNU6-1078P-201ENST00000364522 103 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 snoZ40.1-201ENST00000364540 72 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 MIR490-201ENST00000384865 128 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC091390.3-201ENST00000426478 338 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AL390023.1-201ENST00000428836 262 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 ATP5JP1-201ENST00000431631 322 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 OR4K11P-201ENST00000431829 904 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 MTCYBP3-201ENST00000445588 1137 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 RPL26P28-201ENST00000451325 435 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AP1S2P1-201ENST00000457344 379 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 RPS20P20-201ENST00000460498 340 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 RPS15AP34-201ENST00000487776 387 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 OR2A20P-203ENST00000498397 1268 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC110794.1-201ENST00000505816 425 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 XKRY-201ENST00000510392 1100 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 APOOP4-201ENST00000513530 597 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 ATP5F1P5-201ENST00000526403 760 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC007458.1-201ENST00000542812 373 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC005476.1-201ENST00000554427 397 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC093838.1-201ENST00000613014 469 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC140725.3-201ENST00000616193 880 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC126544.2-201ENST00000625174 749 ntBASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.94□□□□□ -1.94
ZNF540Q8NDQ6 AC109315.1-201ENST00000584143 1347 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AL161781.1-201ENST00000354277 403 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 RNU4-35P-201ENST00000362588 141 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 RNU6-637P-201ENST00000384050 107 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC092047.1-201ENST00000424997 240 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AL606517.1-201ENST00000446914 387 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 RPL18AP17-201ENST00000455326 198 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC126182.1-201ENST00000478134 357 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC138853.1-201ENST00000503549 823 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC113347.3-201ENST00000509113 148 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 RN7SKP43-201ENST00000516173 320 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 SNORA31.18-201ENST00000517043 134 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC025281.1-201ENST00000567026 265 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 BBIP1P1-201ENST00000602999 279 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC069431.2-201ENST00000604149 1099 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC112220.2-201ENST00000605513 533 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC034102.8-201ENST00000615146 484 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC127502.3-201ENST00000636170 1206 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AC135776.4-201ENST00000624300 1904 ntBASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
ZNF540Q8NDQ6 AL161431.1-201ENST00000618966 4205 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 DDX10P1-201ENST00000448545 1933 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 RNU6-97P-201ENST00000363387 104 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 ESD-201ENST00000378697 1079 ntTSL 5 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 RNA5SP229-201ENST00000410809 99 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 OR4K6P-201ENST00000416478 897 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MTCO2P17-201ENST00000424336 677 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC093151.1-201ENST00000427711 313 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms