Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA1P55317 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA1P55317 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA1P55317 RAC1P8-201ENST00000427086 527 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC079780.1-201ENST00000428259 207 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC241584.1-201ENST00000438469 1241 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA1P55317 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA1P55317 MRPL42P4-201ENST00000453267 443 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.15□□□□□ -2.07
FOXA1P55317 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA1P55317 AL445669.2-201ENST00000454425 421 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC244505.3-201ENST00000454598 187 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC009901.1-201ENST00000506703 541 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA1P55317 AC122134.1-202ENST00000569111 1201 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA1P55317 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.15□□□□□ -2.07
FOXA1P55317 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.15□□□□□ -2.07
FOXA1P55317 AC012669.1-201ENST00000603209 283 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC2.15□□□□□ -2.07
FOXA1P55317 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC002064.3-201ENST00000623448 346 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC026634.1-201ENST00000634369 198 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AC090897.3-201ENST00000636973 1157 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA1P55317 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA1P55317 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA1P55317 CKAP2P1-201ENST00000555477 2049 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA1P55317 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA1P55317 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
FOXA1P55317 RNU4-82P-201ENST00000362443 140 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 RNA5SP393-201ENST00000363423 117 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 MIR221-201ENST00000385135 110 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC016769.3-201ENST00000396562 315 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA1P55317 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC092447.6-201ENST00000414578 210 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC107081.1-201ENST00000414975 361 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AL139413.1-201ENST00000421309 217 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC092634.2-201ENST00000428146 1010 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC012497.1-201ENST00000429392 575 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 WARS2P1-201ENST00000429678 537 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA1P55317 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.14□□□□□ -2.07
FOXA1P55317 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 MTCO1P48-201ENST00000448024 1096 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC004263.1-201ENST00000479327 332 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC092902.1-201ENST00000486999 259 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC096751.1-202ENST00000502691 1067 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 MLLT10P2-201ENST00000506434 249 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA1P55317 RNU6-27P-201ENST00000516146 107 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 RNA5SP281-201ENST00000516504 135 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 SNORA48.10-201ENST00000516965 160 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC022690.1-201ENST00000526681 550 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AP003066.2-201ENST00000529375 555 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC090502.2-201ENST00000549267 280 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA1P55317 AC103810.1-201ENST00000579873 453 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 COX6CP3-201ENST00000580869 223 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 MIR5002-201ENST00000584713 97 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 DNAJC19P3-201ENST00000594491 331 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 VN1R87P-201ENST00000596706 487 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC099785.1-201ENST00000605697 437 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC116312.1-201ENST00000606841 314 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC024560.3-201ENST00000608482 349 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC092954.1-201ENST00000609121 445 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AL110115.1-201ENST00000614396 364 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC018926.1-201ENST00000616335 435 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AC009831.4-201ENST00000620744 325 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AL360181.4-201ENST00000621752 134 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 AP000943.4-201ENST00000622912 357 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA1P55317 CTSLP2-204ENST00000629029 392 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 IGHVIII-44-202ENST00000636235 289 ntBASIC2.14□□□□□ -2.07
FOXA1P55317 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
FOXA1P55317 AC091564.4-201ENST00000533934 2194 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA1P55317 HMGB1P5-201ENST00000255320 642 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA1P55317 CD24P4-201ENST00000382840 243 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 MTCO3P1-205ENST00000422088 832 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC092427.1-202ENST00000430569 476 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA1P55317 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.13□□□□□ -2.07
FOXA1P55317 AL591719.1-201ENST00000444669 744 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 MTND2P19-201ENST00000449129 1012 ntBASIC2.13□□□□□ -2.07
FOXA1P55317 AP000852.1-201ENST00000472460 573 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms