Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
CUX1P39880 AC090617.7-201ENST00000623952 126 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC095038.3-201ENST00000634439 195 ntBASIC2.42□□□□□ -2.02
CUX1P39880 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CUX1P39880 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.42□□□□□ -2.02
CUX1P39880 AC103710.2-202ENST00000641454 2853 ntBASIC2.42□□□□□ -2.02
CUX1P39880 Y_RNA.295-201ENST00000364918 102 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AP000567.1-201ENST00000406413 156 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.42□□□□□ -2.02
CUX1P39880 SNORD108-201ENST00000459332 71 ntBASIC2.42□□□□□ -2.02
CUX1P39880 NUP58P1-201ENST00000502546 1738 ntBASIC2.42□□□□□ -2.02
CUX1P39880 MTCO2P9-201ENST00000503214 694 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AIG1P1-201ENST00000503376 148 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.42□□□□□ -2.02
CUX1P39880 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.42□□□□□ -2.02
CUX1P39880 AC008526.1-201ENST00000509149 338 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.42□□□□□ -2.02
CUX1P39880 AP005660.1-201ENST00000522972 293 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.42□□□□□ -2.02
CUX1P39880 AC113368.1-201ENST00000603736 382 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC136443.5-201ENST00000603741 370 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AL135786.2-201ENST00000608422 615 ntBASIC2.42□□□□□ -2.02
CUX1P39880 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CUX1P39880 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CUX1P39880 Z85995.1-201ENST00000415547 335 ntBASIC2.41□□□□□ -2.02
CUX1P39880 MTCYBP18-201ENST00000501056 747 ntBASIC2.41□□□□□ -2.02
CUX1P39880 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.41□□□□□ -2.02
CUX1P39880 RNU6-56P-201ENST00000516986 93 ntBASIC2.41□□□□□ -2.02
CUX1P39880 IGKV2D-36-201ENST00000518643 226 ntBASIC2.41□□□□□ -2.02
CUX1P39880 AC009318.3-201ENST00000616916 503 ntBASIC2.41□□□□□ -2.02
CUX1P39880 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
CUX1P39880 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
CUX1P39880 RNU1-22P-201ENST00000363334 158 ntBASIC2.4□□□□□ -2.03
CUX1P39880 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CUX1P39880 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.4□□□□□ -2.03
CUX1P39880 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.4□□□□□ -2.03
CUX1P39880 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.4□□□□□ -2.03
CUX1P39880 MTCYBP37-201ENST00000510642 1133 ntBASIC2.4□□□□□ -2.03
CUX1P39880 RN7SKP34-201ENST00000516142 244 ntBASIC2.4□□□□□ -2.03
CUX1P39880 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.4□□□□□ -2.03
CUX1P39880 YWHAQP7-201ENST00000603536 658 ntBASIC2.4□□□□□ -2.03
CUX1P39880 U8.1-201ENST00000362843 134 ntBASIC2.39□□□□□ -2.03
CUX1P39880 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.39□□□□□ -2.03
CUX1P39880 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.39□□□□□ -2.03
CUX1P39880 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.39□□□□□ -2.03
CUX1P39880 AC096571.1-202ENST00000506634 735 ntBASIC2.39□□□□□ -2.03
CUX1P39880 AC093281.2-201ENST00000510153 597 ntBASIC2.39□□□□□ -2.03
CUX1P39880 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.39□□□□□ -2.03
CUX1P39880 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.39□□□□□ -2.03
CUX1P39880 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.39□□□□□ -2.03
CUX1P39880 TRAV28-201ENST00000557548 323 ntBASIC2.39□□□□□ -2.03
CUX1P39880 VN1R84P-201ENST00000593697 235 ntBASIC2.39□□□□□ -2.03
CUX1P39880 MIR7973-1-201ENST00000614683 76 ntBASIC2.39□□□□□ -2.03
CUX1P39880 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.39□□□□□ -2.03
CUX1P39880 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CUX1P39880 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CUX1P39880 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CUX1P39880 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CUX1P39880 AC090774.1-201ENST00000435925 246 ntBASIC2.38□□□□□ -2.03
CUX1P39880 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.38□□□□□ -2.03
CUX1P39880 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.38□□□□□ -2.03
CUX1P39880 AC080078.3-201ENST00000605407 463 ntBASIC2.38□□□□□ -2.03
CUX1P39880 AC090425.2-201ENST00000608818 501 ntBASIC2.38□□□□□ -2.03
CUX1P39880 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.38□□□□□ -2.03
CUX1P39880 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.38□□□□□ -2.03
CUX1P39880 MIR320A-201ENST00000385302 82 ntBASIC2.37□□□□□ -2.03
CUX1P39880 AL136133.1-201ENST00000413694 376 ntBASIC2.37□□□□□ -2.03
CUX1P39880 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.37□□□□□ -2.03
CUX1P39880 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.37□□□□□ -2.03
CUX1P39880 AL445669.1-201ENST00000426743 755 ntBASIC2.37□□□□□ -2.03
CUX1P39880 AL365400.1-201ENST00000431854 640 ntBASIC2.37□□□□□ -2.03
CUX1P39880 HMGB3P10-201ENST00000434734 572 ntBASIC2.37□□□□□ -2.03
CUX1P39880 HMGN2P20-201ENST00000437531 273 ntBASIC2.37□□□□□ -2.03
CUX1P39880 MTND2P29-201ENST00000438595 412 ntBASIC2.37□□□□□ -2.03
CUX1P39880 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.37□□□□□ -2.03
CUX1P39880 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.37□□□□□ -2.03
CUX1P39880 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.37□□□□□ -2.03
CUX1P39880 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.37□□□□□ -2.03
CUX1P39880 AL133216.2-202ENST00000634512 349 ntBASIC2.37□□□□□ -2.03
CUX1P39880 Y_RNA.36-201ENST00000362602 112 ntBASIC2.37□□□□□ -2.03
CUX1P39880 RNU4-52P-201ENST00000384209 138 ntBASIC2.37□□□□□ -2.03
CUX1P39880 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.37□□□□□ -2.03
CUX1P39880 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.37□□□□□ -2.03
CUX1P39880 HMGB1P45-201ENST00000435986 653 ntBASIC2.37□□□□□ -2.03
CUX1P39880 MED6P1-201ENST00000439659 713 ntBASIC2.37□□□□□ -2.03
CUX1P39880 AL513321.1-201ENST00000441175 761 ntBASIC2.37□□□□□ -2.03
CUX1P39880 OR4V1P-201ENST00000525394 1140 ntBASIC2.37□□□□□ -2.03
CUX1P39880 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
CUX1P39880 RPS6P15-201ENST00000431996 751 ntBASIC2.36□□□□□ -2.03
CUX1P39880 GTF2IP7-202ENST00000436677 309 ntBASIC2.36□□□□□ -2.03
CUX1P39880 KATNBL1P3-201ENST00000443475 909 ntBASIC2.36□□□□□ -2.03
CUX1P39880 RNA5SP82-201ENST00000516707 92 ntBASIC2.36□□□□□ -2.03
CUX1P39880 SMARCE1P4-201ENST00000523647 241 ntBASIC2.36□□□□□ -2.03
CUX1P39880 AC007115.1-201ENST00000546853 234 ntBASIC2.36□□□□□ -2.03
CUX1P39880 MIR4716-201ENST00000579628 84 ntBASIC2.36□□□□□ -2.03
CUX1P39880 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CUX1P39880 MAPK10-266ENST00000641066 6555 ntBASIC2.36□□□□□ -2.03
CUX1P39880 AC131280.1-202ENST00000624067 4211 ntBASIC2.35□□□□□ -2.03
CUX1P39880 AL596028.1-201ENST00000326971 197 ntBASIC2.35□□□□□ -2.03
CUX1P39880 MIR598-201ENST00000384868 97 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms