Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD3P31249 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 HSPE1P11-201ENST00000339579 310 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 MIR331-201ENST00000362302 94 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP502-201ENST00000362694 119 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP366-201ENST00000365454 123 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNU5E-6P-201ENST00000365574 115 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP151-201ENST00000365632 117 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 RNU1-44P-201ENST00000384453 163 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 SNORD96B-201ENST00000386148 79 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL022722.2-201ENST00000402519 180 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL136372.1-201ENST00000403060 228 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL136116.1-201ENST00000403591 381 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP317-201ENST00000410176 116 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNU2-39P-201ENST00000410604 198 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP311-201ENST00000411290 116 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.37□□□□□ -1.87
HOXD3P31249 AL513185.2-201ENST00000425543 193 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 MED13P1-201ENST00000428342 171 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 ATP5JP1-201ENST00000431631 322 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL132765.1-201ENST00000434165 553 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 CALM1P1-201ENST00000442082 433 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 DDX3P2-201ENST00000446138 111 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD3P31249 MRPS17P3-201ENST00000465453 385 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RPL7L1P8-201ENST00000469911 741 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RN7SL817P-201ENST00000480777 288 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC116562.3-201ENST00000506136 177 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC092436.1-201ENST00000506450 503 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC010486.1-201ENST00000511793 424 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP315-201ENST00000516340 116 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNU7-51P-201ENST00000516560 62 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RNA5SP312-201ENST00000517068 116 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC068587.5-201ENST00000528506 175 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 OR5AL2P-201ENST00000532185 920 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC023050.3-201ENST00000541142 333 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 TVP23BP1-201ENST00000557500 617 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXD3P31249 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 MIR4775-201ENST00000581168 75 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 RPL7P50-201ENST00000600588 727 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC010591.1-201ENST00000603941 649 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL160290.3-201ENST00000604869 165 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 Z98200.1-201ENST00000607298 470 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AL450472.3-201ENST00000615578 367 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 U73479.1-201ENST00000618062 168 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 MIR6891-201ENST00000618788 93 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXD3P31249 AC243312.2-201ENST00000623340 601 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 AC112487.2-201ENST00000637950 304 ntBASIC3.37□□□□□ -1.87
HOXD3P31249 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
HOXD3P31249 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD3P31249 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD3P31249 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD3P31249 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXD3P31249 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HOXD3P31249 RNA5SP307-201ENST00000362863 116 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 RNU1-132P-201ENST00000364300 164 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 Y_RNA.813-201ENST00000364639 102 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 RNU1-13P-201ENST00000384499 162 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 MIR23A-201ENST00000385245 73 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 MIR454-201ENST00000390180 115 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HOXD3P31249 RNU6-1148P-201ENST00000410992 104 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 RPL21P24-201ENST00000413752 448 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 MTND4P28-201ENST00000426217 387 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 RPL35AP22-201ENST00000436855 335 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 GAPDHP27-201ENST00000447427 1020 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AL118520.1-201ENST00000450770 291 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 RPS11P1-201ENST00000451072 473 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 ELOCP23-201ENST00000452014 332 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC012158.1-204ENST00000483430 465 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 RPL21P129-201ENST00000491732 478 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 RPL7P23-201ENST00000493874 747 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms