Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC110588.1-201ENST00000559699 137 ntBASIC5.37□□□□□ -1.55
LIG1P18858 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.37□□□□□ -1.55
LIG1P18858 MIR3667-201ENST00000581025 74 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.37□□□□□ -1.55
LIG1P18858 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.37□□□□□ -1.55
LIG1P18858 AC113194.1-201ENST00000606037 500 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC098657.3-201ENST00000620434 263 ntBASIC5.37□□□□□ -1.55
LIG1P18858 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG1P18858 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG1P18858 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 MTND5P19-201ENST00000424872 1794 ntBASIC5.37□□□□□ -1.55
LIG1P18858 EOGT-210ENST00000615922 1931 ntBASIC5.36□□□□□ -1.55
LIG1P18858 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG1P18858 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
LIG1P18858 RPL32P3-201ENST00000359025 275 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU6-179P-201ENST00000363350 107 ntBASIC5.36□□□□□ -1.55
LIG1P18858 SNORD82-201ENST00000365530 70 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNA5SP151-201ENST00000365632 117 ntBASIC5.36□□□□□ -1.55
LIG1P18858 Y_RNA.482-201ENST00000384377 111 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU1-82P-201ENST00000390851 165 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU6-985P-201ENST00000410182 104 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AL591848.1-201ENST00000413092 322 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG1P18858 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG1P18858 AC069213.2-201ENST00000420238 366 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG1P18858 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.36□□□□□ -1.55
LIG1P18858 TXNP1-201ENST00000441872 371 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RPL23AP43-201ENST00000446445 471 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC020550.1-201ENST00000447385 163 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC133473.1-201ENST00000455173 299 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC005008.1-201ENST00000456151 612 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AL162395.1-201ENST00000457882 422 ntBASIC5.36□□□□□ -1.55
LIG1P18858 snoU13.7-201ENST00000459220 104 ntBASIC5.36□□□□□ -1.55
LIG1P18858 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG1P18858 AC106872.2-201ENST00000494303 480 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.36□□□□□ -1.55
LIG1P18858 RNA5SP446-201ENST00000515955 82 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU6-976P-201ENST00000516086 111 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU6-273P-201ENST00000516937 96 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RN7SKP295-201ENST00000517264 153 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC009902.1-201ENST00000519351 183 ntBASIC5.36□□□□□ -1.55
LIG1P18858 GSTP1P1-201ENST00000548078 319 ntBASIC5.36□□□□□ -1.55
LIG1P18858 RPL21P7-201ENST00000557463 483 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.36□□□□□ -1.55
LIG1P18858 ATP5J2P6-201ENST00000565203 266 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC022726.1-201ENST00000587475 207 ntBASIC5.36□□□□□ -1.55
LIG1P18858 MIR6864-201ENST00000617935 70 ntBASIC5.36□□□□□ -1.55
LIG1P18858 U6.114-201ENST00000636407 96 ntBASIC5.36□□□□□ -1.55
LIG1P18858 AC119674.1-207ENST00000641355 633 ntBASIC5.36□□□□□ -1.55
LIG1P18858 OR52H1-202ENST00000641796 1061 ntBASIC5.36□□□□□ -1.55
LIG1P18858 MTND4P1-201ENST00000457501 1466 ntBASIC5.36□□□□□ -1.55
LIG1P18858 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG1P18858 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
LIG1P18858 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.36□□□□□ -1.55
LIG1P18858 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIG1P18858 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
LIG1P18858 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LIG1P18858 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG1P18858 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.35□□□□□ -1.55
LIG1P18858 AL122126.1-201ENST00000546905 1318 ntBASIC5.35□□□□□ -1.55
LIG1P18858 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIG1P18858 Y_RNA.148-201ENST00000363557 117 ntBASIC5.35□□□□□ -1.55
LIG1P18858 Y_RNA.158-201ENST00000363651 101 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RNU1-130P-201ENST00000363930 160 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RNU6-1318P-201ENST00000365389 103 ntBASIC5.35□□□□□ -1.55
LIG1P18858 MT-TG-201ENST00000387429 68 ntBASIC5.35□□□□□ -1.55
LIG1P18858 CISD1P1-201ENST00000393907 327 ntBASIC5.35□□□□□ -1.55
LIG1P18858 MIR921-201ENST00000401133 56 ntBASIC5.35□□□□□ -1.55
LIG1P18858 MIR548F4-201ENST00000408515 105 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RN7SKP177-201ENST00000410567 355 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RNU6-954P-201ENST00000411355 107 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RPL31P12-201ENST00000422587 358 ntBASIC5.35□□□□□ -1.55
LIG1P18858 NUP35P1-201ENST00000422734 947 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG1P18858 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG1P18858 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG1P18858 AC016696.1-201ENST00000446949 318 ntBASIC5.35□□□□□ -1.55
LIG1P18858 BTF3P15-201ENST00000455606 336 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG1P18858 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.35□□□□□ -1.55
LIG1P18858 RPL7P43-201ENST00000478876 753 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AC091868.1-201ENST00000508746 304 ntBASIC5.35□□□□□ -1.55
LIG1P18858 RNU6-256P-201ENST00000516747 97 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.35□□□□□ -1.55
LIG1P18858 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIG1P18858 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LIG1P18858 AC133555.2-201ENST00000550213 292 ntBASIC5.35□□□□□ -1.55
LIG1P18858 MIR3672-201ENST00000584290 82 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AF038458.1-201ENST00000588406 262 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AL670379.11-201ENST00000604059 253 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AL670379.10-201ENST00000604330 253 ntBASIC5.35□□□□□ -1.55
LIG1P18858 AL670379.12-201ENST00000605291 253 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms