Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
COL6A1P12109 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL6A1P12109 RNU1-83P-201ENST00000363426 164 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 Y_RNA.384-201ENST00000383909 102 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 MTCO3P12-201ENST00000416718 547 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 RPS15AP12-201ENST00000419498 388 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 MTND2P23-201ENST00000422990 651 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC236972.2-201ENST00000434979 310 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AL138799.3-201ENST00000438968 350 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 RNU6-327P-201ENST00000516270 127 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 RNU6-277P-201ENST00000516272 106 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC107934.1-201ENST00000522215 217 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC023050.3-201ENST00000541142 333 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 OR4T1P-201ENST00000554933 911 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A1P12109 AC098848.2-201ENST00000588023 330 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AL606490.9-201ENST00000603331 271 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 RPL23AP92-201ENST00000603609 255 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AL021997.2-201ENST00000615674 271 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AL354950.2-201ENST00000617939 290 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC022106.2-201ENST00000620114 757 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A1P12109 CYP3A51P-201ENST00000633513 256 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL6A1P12109 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A1P12109 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
COL6A1P12109 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A1P12109 RIOK3P1-201ENST00000418778 1528 ntBASIC4.77□□□□□ -1.65
COL6A1P12109 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL6A1P12109 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC097714.1-201ENST00000511272 1647 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL6A1P12109 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A1P12109 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A1P12109 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A1P12109 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.76□□□□□ -1.65
COL6A1P12109 Y_RNA.394-201ENST00000383942 103 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 SNORA32.2-201ENST00000384049 122 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 RNU11-4P-201ENST00000391149 133 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 RNU4-78P-201ENST00000410940 126 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 MTND3P8-201ENST00000412909 339 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC244098.2-201ENST00000422068 99 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC007283.2-201ENST00000424739 197 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 ELOCP18-201ENST00000434209 337 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AL353748.1-201ENST00000440753 474 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 NOTCH2P1-201ENST00000443481 624 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 DDX3P2-201ENST00000446138 111 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AL359893.1-201ENST00000447628 1580 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC005297.2-201ENST00000450430 606 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC090572.1-201ENST00000519251 160 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.76□□□□□ -1.65
COL6A1P12109 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A1P12109 AC006270.2-201ENST00000578523 652 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 SNRPGP15-201ENST00000600149 222 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AC010591.1-201ENST00000603941 649 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AL360085.1-201ENST00000604713 532 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 AL133255.1-201ENST00000606374 441 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A1P12109 AL603758.1-201ENST00000618654 241 ntBASIC4.76□□□□□ -1.65
COL6A1P12109 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.76□□□□□ -1.65
COL6A1P12109 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A1P12109 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL6A1P12109 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
COL6A1P12109 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.76□□□□□ -1.65
COL6A1P12109 OR4G1P-203ENST00000641984 1631 ntBASIC4.75□□□□□ -1.65
COL6A1P12109 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A1P12109 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A1P12109 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A1P12109 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
COL6A1P12109 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms