Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
MSH5O43196 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC9.14□□□□□ -0.95
MSH5O43196 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
MSH5O43196 SNORA36A-201ENST00000384221 132 ntBASIC9.14□□□□□ -0.95
MSH5O43196 EIF4A1P3-201ENST00000411521 244 ntBASIC9.14□□□□□ -0.95
MSH5O43196 MRPL35P3-201ENST00000421557 364 ntBASIC9.14□□□□□ -0.95
MSH5O43196 AC005300.1-201ENST00000428401 373 ntBASIC9.14□□□□□ -0.95
MSH5O43196 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
MSH5O43196 GPM6BP3-201ENST00000442797 145 ntBASIC9.14□□□□□ -0.95
MSH5O43196 RN7SL180P-201ENST00000466769 294 ntBASIC9.14□□□□□ -0.95
MSH5O43196 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC9.14□□□□□ -0.95
MSH5O43196 MT1CP-201ENST00000567054 174 ntBASIC9.14□□□□□ -0.95
MSH5O43196 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC9.14□□□□□ -0.95
MSH5O43196 MIR6862-1-201ENST00000613016 70 ntBASIC9.14□□□□□ -0.95
MSH5O43196 MIR6862-2-201ENST00000614755 70 ntBASIC9.14□□□□□ -0.95
MSH5O43196 MIR6729-201ENST00000618194 65 ntBASIC9.14□□□□□ -0.95
MSH5O43196 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
MSH5O43196 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
MSH5O43196 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC9.14□□□□□ -0.95
MSH5O43196 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
MSH5O43196 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
MSH5O43196 AL662795.2-201ENST00000624252 3706 ntBASIC9.14□□□□□ -0.95
MSH5O43196 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.95
MSH5O43196 LARS-201ENST00000274562 2213 ntTSL 2 BASIC9.13□□□□□ -0.95
MSH5O43196 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC9.13□□□□□ -0.95
MSH5O43196 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC9.13□□□□□ -0.95
MSH5O43196 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 RNA5SP308-201ENST00000362532 115 ntBASIC9.13□□□□□ -0.95
MSH5O43196 SNORD32A-201ENST00000364805 84 ntBASIC9.13□□□□□ -0.95
MSH5O43196 Y_RNA.634-201ENST00000364811 113 ntBASIC9.13□□□□□ -0.95
MSH5O43196 RNA5SP496-201ENST00000391240 109 ntBASIC9.13□□□□□ -0.95
MSH5O43196 AC026310.1-201ENST00000396004 378 ntBASIC9.13□□□□□ -0.95
MSH5O43196 AL357515.1-201ENST00000402967 542 ntBASIC9.13□□□□□ -0.95
MSH5O43196 DDX39BP1-205ENST00000422507 192 ntBASIC9.13□□□□□ -0.95
MSH5O43196 EIF4HP2-201ENST00000424380 563 ntBASIC9.13□□□□□ -0.95
MSH5O43196 RPS10P20-201ENST00000494130 463 ntBASIC9.13□□□□□ -0.95
MSH5O43196 AP001781.1-201ENST00000530977 207 ntBASIC9.13□□□□□ -0.95
MSH5O43196 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC9.13□□□□□ -0.95
MSH5O43196 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC9.13□□□□□ -0.95
MSH5O43196 ZNF402P-201ENST00000404435 3100 ntBASIC9.13□□□□□ -0.95
MSH5O43196 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC9.13□□□□□ -0.95
MSH5O43196 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC9.13□□□□□ -0.95
MSH5O43196 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC9.13□□□□□ -0.95
MSH5O43196 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC9.12□□□□□ -0.95
MSH5O43196 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
MSH5O43196 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 AL161901.1-201ENST00000624954 3425 ntBASIC9.12□□□□□ -0.95
MSH5O43196 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC9.12□□□□□ -0.95
MSH5O43196 RPL23P2-201ENST00000320371 421 ntBASIC9.12□□□□□ -0.95
MSH5O43196 PLA2G12AP2-201ENST00000424744 264 ntBASIC9.12□□□□□ -0.95
MSH5O43196 RNU2-11P-201ENST00000459191 187 ntBASIC9.12□□□□□ -0.95
MSH5O43196 AC072052.1-201ENST00000496556 306 ntBASIC9.12□□□□□ -0.95
MSH5O43196 AC095057.1-201ENST00000507583 168 ntBASIC9.12□□□□□ -0.95
MSH5O43196 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC9.12□□□□□ -0.95
MSH5O43196 IGLC4-201ENST00000517690 248 ntBASIC9.12□□□□□ -0.95
MSH5O43196 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC9.12□□□□□ -0.95
MSH5O43196 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC9.12□□□□□ -0.95
MSH5O43196 ACTG1P15-201ENST00000570019 1063 ntBASIC9.12□□□□□ -0.95
MSH5O43196 RPL7AP69-201ENST00000595306 806 ntBASIC9.12□□□□□ -0.95
MSH5O43196 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
MSH5O43196 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC9.12□□□□□ -0.95
MSH5O43196 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 UG0898H09-202ENST00000623646 7040 ntBASIC9.12□□□□□ -0.95
MSH5O43196 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
MSH5O43196 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
MSH5O43196 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC9.11□□□□□ -0.95
MSH5O43196 LRRC37A16P-202ENST00000586022 3725 ntBASIC9.11□□□□□ -0.95
MSH5O43196 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 RNU1-5P-201ENST00000362684 144 ntBASIC9.11□□□□□ -0.95
MSH5O43196 MIR548D2-201ENST00000384955 97 ntBASIC9.11□□□□□ -0.95
MSH5O43196 SNORA40C-201ENST00000391285 128 ntBASIC9.11□□□□□ -0.95
MSH5O43196 RNA5SP241-201ENST00000391326 114 ntBASIC9.11□□□□□ -0.95
MSH5O43196 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 AHCYP8-201ENST00000425108 209 ntBASIC9.11□□□□□ -0.95
MSH5O43196 CYP4F32P-201ENST00000426492 504 ntBASIC9.11□□□□□ -0.95
MSH5O43196 AC093878.1-201ENST00000515630 432 ntBASIC9.11□□□□□ -0.95
MSH5O43196 RN7SL261P-201ENST00000613441 282 ntBASIC9.11□□□□□ -0.95
MSH5O43196 SCARNA4-202ENST00000625402 129 ntBASIC9.11□□□□□ -0.95
MSH5O43196 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
MSH5O43196 ALB-214ENST00000509063 1911 ntTSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC9.11□□□□□ -0.95
MSH5O43196 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 271.6 ms