Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 HSPE1P6-201ENST00000479457 291 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC080014.1-201ENST00000496877 1201 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.16□□□□□ -1.74
NPHP1O15259 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.16□□□□□ -1.74
NPHP1O15259 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NPHP1O15259 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.16□□□□□ -1.74
NPHP1O15259 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.16□□□□□ -1.74
NPHP1O15259 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC4.16□□□□□ -1.74
NPHP1O15259 MIR544B-201ENST00000582372 78 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.16□□□□□ -1.74
NPHP1O15259 AC026790.2-201ENST00000606282 430 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC063944.3-201ENST00000609969 533 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AL355816.2-201ENST00000610049 647 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC087683.2-201ENST00000611384 326 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AL157817.1-201ENST00000614264 790 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC002076.2-201ENST00000617362 122 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.16□□□□□ -1.74
NPHP1O15259 AC009268.2-201ENST00000621925 457 ntBASIC4.16□□□□□ -1.74
NPHP1O15259 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.16□□□□□ -1.74
NPHP1O15259 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.16□□□□□ -1.74
NPHP1O15259 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.16□□□□□ -1.74
NPHP1O15259 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.15□□□□□ -1.74
NPHP1O15259 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.15□□□□□ -1.74
NPHP1O15259 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.15□□□□□ -1.75
NPHP1O15259 Y_RNA.18-201ENST00000362461 102 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 MIR184-201ENST00000384962 84 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AL590084.2-201ENST00000401481 382 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.15□□□□□ -1.75
NPHP1O15259 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.15□□□□□ -1.75
NPHP1O15259 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.15□□□□□ -1.75
NPHP1O15259 SNRPEP4-201ENST00000435815 279 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 NDUFB4P6-201ENST00000436819 366 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.15□□□□□ -1.75
NPHP1O15259 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.15□□□□□ -1.75
NPHP1O15259 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.15□□□□□ -1.75
NPHP1O15259 RPS3AP50-201ENST00000487064 803 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AP002404.1-201ENST00000532005 451 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 SETP2-201ENST00000553886 926 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.15□□□□□ -1.75
NPHP1O15259 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.15□□□□□ -1.75
NPHP1O15259 AC008751.2-201ENST00000597885 980 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NPHP1O15259 BCRP9-201ENST00000605312 388 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AC009159.2-201ENST00000617603 606 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AC138932.5-201ENST00000617759 563 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AL356321.1-201ENST00000621360 228 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AC079597.1-201ENST00000624306 508 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 AC017037.3-201ENST00000625016 472 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 CUL1P1-201ENST00000509510 2425 ntBASIC4.15□□□□□ -1.75
NPHP1O15259 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
NPHP1O15259 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC008568.2-201ENST00000623862 2313 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 RNU5A-1-201ENST00000362698 116 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.14□□□□□ -1.75
NPHP1O15259 SNORA36C-201ENST00000384289 132 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.14□□□□□ -1.75
NPHP1O15259 RAP1BP1-201ENST00000412709 553 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 MTND1P21-201ENST00000412991 285 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AL357552.1-201ENST00000445254 415 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.14□□□□□ -1.75
NPHP1O15259 RPL31P60-201ENST00000478450 367 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NPHP1O15259 SNORA70.19-201ENST00000516717 90 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 Y_RNA.717-201ENST00000517106 92 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 RPL12P22-201ENST00000519073 490 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 NDUFB9P3-201ENST00000521269 501 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AP004247.1-201ENST00000531556 1289 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC027807.1-201ENST00000559921 996 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 BNIP3P23-201ENST00000599655 511 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 ATP5A1P2-202ENST00000616464 443 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AL603758.1-201ENST00000618654 241 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.14□□□□□ -1.75
NPHP1O15259 AC007998.5-201ENST00000622938 237 ntBASIC4.14□□□□□ -1.75
NPHP1O15259 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.14□□□□□ -1.75
NPHP1O15259 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NPHP1O15259 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
NPHP1O15259 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
NPHP1O15259 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPHP1O15259 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPHP1O15259 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
NPHP1O15259 RNU6-769P-201ENST00000384407 104 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 MIR1290-201ENST00000408735 78 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.13□□□□□ -1.75
NPHP1O15259 RPL35AP12-201ENST00000425362 338 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 AL158071.1-201ENST00000430315 461 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.13□□□□□ -1.75
NPHP1O15259 FAM103A2P-201ENST00000444122 354 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 OR6K1P-201ENST00000456766 971 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.13□□□□□ -1.75
NPHP1O15259 MTCYBP35-201ENST00000503630 1137 ntBASIC4.13□□□□□ -1.75
NPHP1O15259 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.13□□□□□ -1.75
NPHP1O15259 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.13□□□□□ -1.75
NPHP1O15259 AC013828.2-201ENST00000532487 235 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms