Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 Y_RNA.548-201ENST00000384656 105 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 RNU6-253P-201ENST00000384730 105 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SNORA48.8-201ENST00000391324 134 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 RSL24D1P4-201ENST00000400938 484 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC090774.1-201ENST00000435925 246 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC091862.1-201ENST00000438016 1100 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 RPL36AP33-201ENST00000450395 310 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 MTND2P14-201ENST00000482139 351 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 HSPE1P23-201ENST00000509838 286 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC010265.1-201ENST00000513509 211 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SNORA31.1-201ENST00000515993 133 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SNORA31.5-201ENST00000516190 133 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 RNU1-143P-201ENST00000516296 146 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SNORA64.4-201ENST00000516632 81 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SNORD59.2-201ENST00000516873 68 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 MIR5680-201ENST00000577577 84 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AL606834.2-201ENST00000602954 668 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC008962.1-201ENST00000605729 304 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC090186.1-201ENST00000605991 572 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC107294.3-201ENST00000609211 526 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AP000254.1-201ENST00000609934 520 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 U1.23-201ENST00000610293 146 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 RNU1-68P-201ENST00000615382 146 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 U1.39-201ENST00000621562 146 ntBASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.03□□□□□ -1.92
ATG4BQ9Y4P1 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.93
ATG4BQ9Y4P1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-462P-201ENST00000362659 105 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-97P-201ENST00000363387 104 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 SNORD56.3-201ENST00000363507 71 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 SNORA38.1-201ENST00000364172 131 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-744P-201ENST00000365557 107 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-76P-201ENST00000384060 104 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-1200P-201ENST00000384162 107 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-1316P-201ENST00000384242 108 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-1207P-201ENST00000384343 107 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RPS4XP3-201ENST00000398541 413 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AL356421.1-201ENST00000403255 413 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RPS3AP24-201ENST00000407896 734 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 TMEM167AP1-201ENST00000423409 219 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 BX890604.2-201ENST00000427883 474 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 LSM1P1-201ENST00000438629 273 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RPL26P6-201ENST00000440913 438 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AL592447.1-201ENST00000447592 540 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AL590664.1-201ENST00000448065 339 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNA5SP310-201ENST00000459084 116 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RPL30P9-201ENST00000465586 330 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC026427.2-201ENST00000506228 536 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 ELOCP32-201ENST00000548625 324 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 YPEL5P2-201ENST00000605553 359 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 RNU6-88P-201ENST00000606801 100 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 uc_338.25-201ENST00000613756 156 ntBASIC3.02□□□□□ -1.93
ATG4BQ9Y4P1 AL450472.3-201ENST00000615578 367 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms