Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXA2Q9Y261 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXA2Q9Y261 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 RN7SKP285-201ENST00000410137 318 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 RNU2-33P-201ENST00000410344 192 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 DPPA2P1-201ENST00000428060 556 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 RPS29P12-201ENST00000460178 152 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC010631.1-201ENST00000474150 156 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 FCF1P3-201ENST00000496394 590 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC116347.2-201ENST00000514912 523 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 SNORA31.21-201ENST00000517180 77 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 RNU6-1231P-201ENST00000517185 103 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 RNU1-45P-201ENST00000517191 141 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC093012.1-202ENST00000549403 582 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC068135.2-201ENST00000569293 1028 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AL161729.4-201ENST00000604650 476 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC006077.1-201ENST00000604746 343 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 OR10AB1P-201ENST00000609613 938 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AL356863.1-201ENST00000623378 1080 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC034229.5-201ENST00000624258 185 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 AC068647.1-201ENST00000489539 2265 ntBASIC2.9□□□□□ -1.95
FOXA2Q9Y261 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA2Q9Y261 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC007656.2-201ENST00000624902 4547 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 RNU6-270P-201ENST00000364131 105 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 RAP1BP1-201ENST00000412709 553 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC099548.1-201ENST00000421443 426 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 ZNF863P-201ENST00000426746 417 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL049734.2-201ENST00000441066 616 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 BNIP3P2-201ENST00000441221 577 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 HMGB3P8-201ENST00000449709 577 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC108059.3-201ENST00000456388 214 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 MTCO1P42-201ENST00000457379 726 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 OR2A20P-203ENST00000498397 1268 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC020893.1-201ENST00000502452 580 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 MTND5P13-201ENST00000513046 1079 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC007115.1-201ENST00000546853 234 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL606834.2-201ENST00000602954 668 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 RNU1-30P-201ENST00000606575 163 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC087683.2-201ENST00000611384 326 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC090970.3-201ENST00000612566 866 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC004852.3-201ENST00000614131 326 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC022149.2-201ENST00000621061 203 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AC131159.1-201ENST00000621854 213 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 MTND1P37-201ENST00000636562 264 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 AL079305.1-201ENST00000623159 3008 ntBASIC2.89□□□□□ -1.95
FOXA2Q9Y261 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA2Q9Y261 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms