Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MTCO1P17-201ENST00000411522 491 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 SYF2P2-201ENST00000417620 583 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC091390.3-201ENST00000426478 338 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 RPL23AP82-202ENST00000427528 469 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC093151.1-201ENST00000427711 313 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 OR4K11P-201ENST00000431829 904 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 UBE2V1P13-201ENST00000436983 439 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 LSM1P1-201ENST00000438629 273 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC073387.1-201ENST00000453261 709 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 CENPBD1P1-201ENST00000464061 469 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC109464.2-201ENST00000510242 943 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC026801.2-201ENST00000515352 425 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC107934.2-201ENST00000518653 310 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC125611.2-201ENST00000551907 647 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 SETP2-201ENST00000553886 926 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 GTF2IP22-201ENST00000554443 182 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 ZNF415P1-201ENST00000582279 1166 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC010591.1-201ENST00000603941 649 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC008962.1-201ENST00000605729 304 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC034229.4-201ENST00000607861 441 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC072039.2-201ENST00000608883 439 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC009570.1-201ENST00000609599 745 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 MIR7851-201ENST00000610611 160 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL356596.1-201ENST00000624230 379 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 U6.105-201ENST00000637379 88 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AP000526.1-201ENST00000603308 1388 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RPL21P132-201ENST00000331267 462 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RNU6-1214P-201ENST00000363650 109 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MIR493-201ENST00000385254 89 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MIR887-201ENST00000401258 79 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MIR1290-201ENST00000408735 78 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RN7SKP111-201ENST00000410349 271 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 TPMTP3-201ENST00000411928 735 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MTND1P21-201ENST00000412991 285 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL022400.1-201ENST00000423946 935 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL117351.1-201ENST00000438864 766 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL591719.1-201ENST00000444669 744 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 GAPDHP27-201ENST00000447427 1020 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL109741.2-201ENST00000455561 343 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RNA5SP310-201ENST00000459084 116 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RPL23AP67-201ENST00000465341 474 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC034222.1-201ENST00000494052 532 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL358832.1-201ENST00000497800 389 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC111000.2-201ENST00000507775 550 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MTND5P4-201ENST00000514978 288 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 SNORA31.1-201ENST00000515993 133 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 SNORA31.5-201ENST00000516190 133 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 SNORA31.22-201ENST00000517204 135 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AP003461.1-201ENST00000528866 78 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AP000889.1-201ENST00000530968 660 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC090888.2-201ENST00000559765 1144 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 RPL21P12-201ENST00000559810 515 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC009464.1-201ENST00000615731 469 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC002076.2-201ENST00000617362 122 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AL607023.1-201ENST00000620045 248 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 U4.6-201ENST00000621618 127 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC006111.3-201ENST00000622137 383 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC007490.1-201ENST00000624321 703 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 MIR4275-201ENST00000636486 87 ntBASIC3.04□□□□□ -1.92
DDX28Q9NUL7 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms