Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 AC079089.3-201ENST00000603094 673 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.34□□□□□ -1.87
CCDC43Q96MW1 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC43Q96MW1 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC43Q96MW1 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.34□□□□□ -1.88
CCDC43Q96MW1 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AL079305.1-201ENST00000623159 3008 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 MIR1284-201ENST00000408337 120 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 PPP1R11P2-201ENST00000423543 382 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 SNORD121B-201ENST00000458838 81 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC117440.1-201ENST00000474107 571 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 RN7SL633P-201ENST00000488974 297 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 SCGB1D5P-201ENST00000515134 247 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 COX6CP8-201ENST00000522620 226 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC023813.2-201ENST00000564321 469 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 ACTR3BP3-201ENST00000565577 979 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 TMF1P1-201ENST00000576058 373 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AL451007.1-201ENST00000595491 289 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AL160237.3-201ENST00000604114 1013 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC004832.5-201ENST00000608677 401 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC107075.1-201ENST00000613695 314 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 AC109809.1-201ENST00000619665 545 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 TPTE2P4-201ENST00000258589 1605 ntBASIC3.33□□□□□ -1.88
CCDC43Q96MW1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC43Q96MW1 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC073325.2-201ENST00000339545 159 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 Y_RNA.192-201ENST00000363977 102 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 SNORA51.4-201ENST00000364993 124 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 SNORA9.2-201ENST00000365361 133 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 RN7SKP58-201ENST00000411010 305 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC009237.8-201ENST00000445492 379 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 MTND1P31-201ENST00000449206 961 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AP001269.3-201ENST00000588718 329 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC013553.2-201ENST00000604244 589 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AC087359.1-201ENST00000508335 1740 ntBASIC3.32□□□□□ -1.88
CCDC43Q96MW1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC43Q96MW1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 OR4G2P-202ENST00000641004 1759 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 RNU6-97P-201ENST00000363387 104 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 RNU5E-8P-201ENST00000363502 116 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 RNU6-621P-201ENST00000364752 109 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 Y_RNA.465-201ENST00000384293 102 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 RNU6-1207P-201ENST00000384343 107 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 MIR325-201ENST00000385260 98 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AL953862.1-201ENST00000423016 168 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AL356867.1-201ENST00000429623 299 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 OR2B8P-201ENST00000432841 938 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 snoU13.28-201ENST00000459235 104 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC091179.1-201ENST00000461606 579 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC116353.3-201ENST00000511215 249 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC109445.1-201ENST00000512356 383 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC010374.2-201ENST00000512933 535 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 RNU6-928P-201ENST00000516876 104 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AL157392.4-201ENST00000609756 345 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 AC007318.2-201ENST00000620999 243 ntBASIC3.31□□□□□ -1.88
CCDC43Q96MW1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms