Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC021146.1-201ENST00000511202 716 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 NDUFB4P9-201ENST00000511646 388 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AP003033.1-201ENST00000527244 415 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 DEFB108A-201ENST00000530110 222 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC125611.2-201ENST00000551907 647 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 CBX3P5-201ENST00000552017 521 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 DEFB131E-202ENST00000602581 683 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC245014.2-201ENST00000603689 287 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC080078.2-201ENST00000603766 501 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC008277.2-201ENST00000605196 797 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC246785.4-201ENST00000605374 287 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC245517.5-201ENST00000611529 162 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC093838.1-201ENST00000613014 469 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 uc_338.12-201ENST00000616344 181 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 AC006133.1-201ENST00000617106 264 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 C2orf27A-204ENST00000623058 969 ntBASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CHMP4CQ96CF2 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 MIR423-201ENST00000362201 94 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RNU5E-1-201ENST00000362477 120 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RNA5SP97-201ENST00000365006 84 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 MIR199A2-201ENST00000385289 110 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL138878.1-201ENST00000405131 347 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RN7SKP159-201ENST00000410657 292 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC079780.1-201ENST00000428259 207 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AF228730.2-201ENST00000438784 848 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RPS24P6-201ENST00000452670 400 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 snoU13.24-201ENST00000458998 104 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RPL7P47-201ENST00000497299 556 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 HMGB1P22-201ENST00000505315 124 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC005921.1-201ENST00000510589 286 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 SNORA67.7-201ENST00000516664 135 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 Vault.3-201ENST00000516676 95 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RNU6-1073P-201ENST00000517182 106 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 SUMO2P20-201ENST00000520803 283 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL391840.1-201ENST00000571144 367 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 EIF1P4-201ENST00000572664 335 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 FAM60BP-201ENST00000578364 658 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 MIR4644-201ENST00000579929 84 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL590282.1-201ENST00000610379 1136 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC008121.2-201ENST00000614647 523 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL450472.3-201ENST00000615578 367 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AL603758.1-201ENST00000618654 241 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 AC243312.2-201ENST00000623340 601 ntBASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC4.59□□□□□ -1.67
CHMP4CQ96CF2 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.59□□□□□ -1.68
CHMP4CQ96CF2 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 NCAPGP1-201ENST00000505112 1814 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 Y_RNA.3-201ENST00000362331 103 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 RNA5SP189-201ENST00000364920 115 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 RNY3P13-201ENST00000365542 102 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 RNU6-1215P-201ENST00000384441 102 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AL109755.1-201ENST00000401791 649 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 UBE2FP1-201ENST00000416536 447 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC137499.1-201ENST00000427602 88 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 Z74696.2-201ENST00000436514 498 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC093156.1-201ENST00000440382 670 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AL136380.1-201ENST00000447970 162 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 MTCO2P29-201ENST00000465212 189 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 RBM43P1-201ENST00000476891 1081 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC105252.1-201ENST00000503089 286 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 VN1R104P-201ENST00000505115 1009 ntBASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.58□□□□□ -1.68
CHMP4CQ96CF2 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms