Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 GCA-203ENST00000429691 824 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL590664.1-201ENST00000448065 339 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 MTND1P31-201ENST00000449206 961 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC108729.1-201ENST00000487812 947 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC114981.1-201ENST00000503897 678 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC117522.3-201ENST00000507974 584 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 SNORA9.3-201ENST00000516383 129 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC022861.1-201ENST00000522981 663 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC087373.1-201ENST00000524920 491 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AGGF1P5-201ENST00000567900 919 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC020895.1-201ENST00000595362 272 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC119501.1-201ENST00000603646 475 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 BNIP3P11-201ENST00000603878 563 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC021749.1-201ENST00000604322 607 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL139418.1-201ENST00000613613 177 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL050303.3-201ENST00000613704 284 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC090740.1-201ENST00000623193 2262 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AP001002.2-201ENST00000625137 386 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL672167.1-206ENST00000356293 943 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 Y_RNA.234-201ENST00000364409 97 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNU6-1180P-201ENST00000364935 107 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNU6-636P-201ENST00000384598 107 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 MIR512-1-201ENST00000384913 84 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 MIR1284-201ENST00000408337 120 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNU6-584P-201ENST00000410350 95 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNA5SP120-201ENST00000410900 112 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 PIGPP2-201ENST00000411569 458 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC069157.1-201ENST00000421749 137 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL953862.1-201ENST00000423016 168 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RPL26P6-201ENST00000440913 438 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC002381.1-201ENST00000447049 280 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL162389.1-201ENST00000449233 177 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RPL23AP31-201ENST00000456160 467 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL359385.1-201ENST00000456509 365 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 DUXAP8-207ENST00000456786 622 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RPL30P9-201ENST00000465586 330 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC117440.1-201ENST00000474107 571 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RPS3AP43-201ENST00000479743 781 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNU6-150P-201ENST00000516237 95 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 SNORA70.16-201ENST00000516390 95 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 RNU6-826P-201ENST00000516827 104 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 SNORA31.22-201ENST00000517204 135 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 COX6CP8-201ENST00000522620 226 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 OR5G4P-201ENST00000525251 760 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 MTCO2P15-201ENST00000532655 656 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 H3F3AP1-201ENST00000559984 334 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC107952.2-201ENST00000606048 486 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 DUXAP10-204ENST00000612052 616 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL020991.1-201ENST00000612314 373 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 SNHG22-203ENST00000617833 660 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AL161637.1-201ENST00000622380 412 ntBASIC2.54□□□□□ -2
CCDC54Q8NEL0 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.54□□□□□ -2
CCDC54Q8NEL0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 RNA5SP139-201ENST00000364340 117 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL031679.1-201ENST00000400616 525 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 RSL24D1P4-201ENST00000400938 484 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 RPS3AP24-201ENST00000407896 734 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 MTATP6P27-201ENST00000416987 621 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 MTCYBP38-201ENST00000417160 1123 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL645937.1-202ENST00000421799 937 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC005300.1-201ENST00000428401 373 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC091862.1-201ENST00000438016 1100 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 LSM1P1-201ENST00000438629 273 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL117351.1-201ENST00000438864 766 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AL591503.2-201ENST00000442314 1005 ntBASIC2.53□□□□□ -2
CCDC54Q8NEL0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms