Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNU4-1-201ENST00000363925 141 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNA5SP97-201ENST00000365006 84 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 Y_RNA.409-201ENST00000383990 98 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNU6-456P-201ENST00000384493 107 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNU6-278P-201ENST00000390945 109 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RPL7P60-201ENST00000397636 735 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 USP9YP27-201ENST00000418455 438 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC092832.1-201ENST00000422934 400 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 FTH1P1-201ENST00000437933 532 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC069285.2-201ENST00000440210 275 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RPL23AP20-201ENST00000447965 421 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 UBDP1-202ENST00000457888 382 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AL133162.1-201ENST00000463228 453 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RN7SL807P-201ENST00000470923 297 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC017037.2-201ENST00000513850 890 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNU6-528P-201ENST00000516926 100 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RNA5SP337-201ENST00000517007 109 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 HMGB3P26-201ENST00000560051 582 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 MIR5684-201ENST00000585074 65 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 HMGB2P1-201ENST00000591146 634 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AL391646.1-201ENST00000603860 190 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC010680.4-201ENST00000605334 543 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 Z98200.1-201ENST00000607298 470 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC007038.2-201ENST00000608095 740 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 AC005086.4-201ENST00000623065 213 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 MTCO1P9-201ENST00000505577 1534 ntBASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.81□□□□□ -1.64
SMC1BQ8NDV3 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 OR5J1P-201ENST00000313544 939 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 Y_RNA.88-201ENST00000363029 99 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 RNU6-263P-201ENST00000363811 107 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 Y_RNA.548-201ENST00000384656 105 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MIR19A-201ENST00000384878 82 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MIR708-201ENST00000390708 88 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MIR1179-201ENST00000408703 91 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AL591419.1-201ENST00000427423 339 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 RPL21P91-201ENST00000429231 479 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC133473.1-201ENST00000455173 299 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 HMGB1P25-201ENST00000468402 607 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 RPL23AP65-201ENST00000475608 468 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 TMEM248P1-201ENST00000510579 951 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 Y_RNA.693-201ENST00000516641 110 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC022616.3-201ENST00000523940 148 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 CR383656.7-201ENST00000548164 174 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC091516.1-201ENST00000549191 703 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC025678.1-201ENST00000567861 338 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AP000907.4-201ENST00000604143 237 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC015813.4-201ENST00000610469 179 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AL356585.4-201ENST00000623078 1229 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AL138713.1-201ENST00000624026 2130 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AL035425.3-201ENST00000564206 4996 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 AC105074.1-201ENST00000623380 3095 ntBASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMC1BQ8NDV3 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 AC090229.1-201ENST00000590983 1609 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 RNA5SP432-201ENST00000362480 116 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 RNU6-780P-201ENST00000391030 104 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 RNU6-837P-201ENST00000391056 108 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 RNU2-47P-201ENST00000410649 186 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 RNU4-78P-201ENST00000410940 126 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 AC007283.2-201ENST00000424739 197 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 MTCO1P20-201ENST00000425366 358 ntBASIC4.79□□□□□ -1.64
SMC1BQ8NDV3 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms