Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC025518.1-201ENST00000479856 347 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC055855.1-201ENST00000489563 579 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 RPL12P22-201ENST00000519073 490 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC011468.4-201ENST00000603942 409 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL591424.2-201ENST00000617023 128 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC009159.1-201ENST00000618386 642 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC009509.4-201ENST00000619202 509 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL713922.2-201ENST00000619384 716 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL049781.1-201ENST00000623195 3585 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 TNPO1P3-201ENST00000436471 2662 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RNA5SP399-201ENST00000364003 117 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 HMGN2P8-201ENST00000391458 268 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RPL7AP73-201ENST00000413490 353 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RPL30P2-201ENST00000414021 291 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC016907.1-201ENST00000419483 435 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RPL22P17-201ENST00000438729 315 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 PGBD4P3-201ENST00000440731 581 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 MTCO1P19-201ENST00000443487 500 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RPS3AP46-201ENST00000448352 682 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 MTCO3P20-201ENST00000454926 688 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 RPL21P8-201ENST00000465083 535 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC114967.1-201ENST00000504890 259 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AP003467.2-201ENST00000520175 319 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AP002963.1-201ENST00000530590 184 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 LARP7P3-201ENST00000579888 337 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC012493.2-201ENST00000595083 291 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC119751.7-201ENST00000600494 245 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AL355472.4-201ENST00000610233 626 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC006386.2-201ENST00000624491 75 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC012005.1-201ENST00000624575 75 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 MIR4275-201ENST00000636486 87 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AC099654.13-201ENST00000639774 207 ntBASIC3.63□□□□□ -1.83
COL28A1Q2UY09 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL28A1Q2UY09 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 RNU6-637P-201ENST00000384050 107 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 MIR19A-201ENST00000384878 82 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL136372.1-201ENST00000403060 228 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 USP9YP13-201ENST00000417797 480 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL138799.3-201ENST00000438968 350 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 USP9YP29-201ENST00000445112 563 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 RAC1P7-201ENST00000445367 377 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 MTCO2P7-201ENST00000446518 666 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AP000936.2-201ENST00000447151 681 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 RPL31P61-201ENST00000496160 376 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 ARL2BPP4-201ENST00000506854 471 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 KLHL2P1-201ENST00000508691 521 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 MTCO3P7-201ENST00000510008 774 ntBASIC3.62□□□□□ -1.83
COL28A1Q2UY09 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
COL28A1Q2UY09 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms