Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Z99714.1-201ENST00000450463 807 ntBASIC2.49□□□□□ -2.01
CUX1P39880 AC022790.1-201ENST00000522872 204 ntBASIC2.49□□□□□ -2.01
CUX1P39880 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.49□□□□□ -2.01
CUX1P39880 AL353770.2-201ENST00000620024 78 ntBASIC2.49□□□□□ -2.01
CUX1P39880 OR4G1P-203ENST00000641984 1631 ntBASIC2.49□□□□□ -2.01
CUX1P39880 DEFB109C-201ENST00000382575 264 ntBASIC2.48□□□□□ -2.01
CUX1P39880 DEFB109B-201ENST00000382656 264 ntBASIC2.48□□□□□ -2.01
CUX1P39880 RNU6-342P-201ENST00000384521 104 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AC073264.1-201ENST00000411508 416 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.48□□□□□ -2.01
CUX1P39880 AC007395.1-201ENST00000451333 677 ntBASIC2.48□□□□□ -2.01
CUX1P39880 SETP2-201ENST00000553886 926 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AC234775.3-201ENST00000564612 656 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AC010735.1-201ENST00000567305 1026 ntBASIC2.48□□□□□ -2.01
CUX1P39880 MIR3660-201ENST00000584845 100 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AC123786.2-201ENST00000603459 275 ntBASIC2.48□□□□□ -2.01
CUX1P39880 AL360085.1-201ENST00000604713 532 ntBASIC2.48□□□□□ -2.01
CUX1P39880 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.48□□□□□ -2.01
CUX1P39880 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.48□□□□□ -2.01
CUX1P39880 RNU6-1263P-201ENST00000384601 106 ntBASIC2.47□□□□□ -2.01
CUX1P39880 HMGN2P19-201ENST00000425149 265 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AC017099.1-201ENST00000448261 1028 ntBASIC2.47□□□□□ -2.01
CUX1P39880 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CUX1P39880 AC005912.1-201ENST00000495392 255 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AC012493.3-201ENST00000604494 112 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.47□□□□□ -2.01
CUX1P39880 RPL21P39-201ENST00000463605 483 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AC092991.1-201ENST00000477176 376 ntBASIC2.47□□□□□ -2.01
CUX1P39880 RPS29P20-201ENST00000489592 171 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AC008015.1-201ENST00000555505 465 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2.47□□□□□ -2.01
CUX1P39880 OR4G1P-201ENST00000588632 938 ntBASIC2.47□□□□□ -2.01
CUX1P39880 OR10AB1P-201ENST00000609613 938 ntBASIC2.47□□□□□ -2.01
CUX1P39880 MIR6515-201ENST00000619843 57 ntBASIC2.47□□□□□ -2.01
CUX1P39880 AL158801.5-201ENST00000623123 465 ntBASIC2.47□□□□□ -2.01
CUX1P39880 MIR6767-201ENST00000637302 66 ntBASIC2.47□□□□□ -2.01
CUX1P39880 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CUX1P39880 AL513185.2-201ENST00000425543 193 ntBASIC2.46□□□□□ -2.02
CUX1P39880 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.46□□□□□ -2.02
CUX1P39880 RPS15AP7-201ENST00000439294 405 ntBASIC2.46□□□□□ -2.02
CUX1P39880 MTND4LP16-201ENST00000440828 295 ntBASIC2.46□□□□□ -2.02
CUX1P39880 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.46□□□□□ -2.02
CUX1P39880 AC023424.2-201ENST00000493479 777 ntBASIC2.46□□□□□ -2.02
CUX1P39880 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.46□□□□□ -2.02
CUX1P39880 RNU1-92P-201ENST00000517017 135 ntBASIC2.46□□□□□ -2.02
CUX1P39880 MIR4446-201ENST00000578505 67 ntBASIC2.46□□□□□ -2.02
CUX1P39880 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.46□□□□□ -2.02
CUX1P39880 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CUX1P39880 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
CUX1P39880 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.45□□□□□ -2.02
CUX1P39880 MTND4LP13-201ENST00000425022 298 ntBASIC2.45□□□□□ -2.02
CUX1P39880 VN1R96P-201ENST00000446052 858 ntBASIC2.45□□□□□ -2.02
CUX1P39880 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.45□□□□□ -2.02
CUX1P39880 AC034244.1-201ENST00000507687 207 ntBASIC2.45□□□□□ -2.02
CUX1P39880 AC011604.1-201ENST00000545978 196 ntBASIC2.45□□□□□ -2.02
CUX1P39880 AC018754.1-201ENST00000607486 925 ntBASIC2.45□□□□□ -2.02
CUX1P39880 uc_338.12-201ENST00000616344 181 ntBASIC2.45□□□□□ -2.02
CUX1P39880 FO624990.1-201ENST00000636373 85 ntBASIC2.45□□□□□ -2.02
CUX1P39880 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
CUX1P39880 RPL5P19-201ENST00000404228 893 ntBASIC2.44□□□□□ -2.02
CUX1P39880 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.44□□□□□ -2.02
CUX1P39880 AC104308.1-201ENST00000454621 333 ntBASIC2.44□□□□□ -2.02
CUX1P39880 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.44□□□□□ -2.02
CUX1P39880 AC004223.1-201ENST00000479840 271 ntBASIC2.44□□□□□ -2.02
CUX1P39880 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.44□□□□□ -2.02
CUX1P39880 AC239860.2-201ENST00000525886 270 ntBASIC2.44□□□□□ -2.02
CUX1P39880 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.44□□□□□ -2.02
CUX1P39880 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.44□□□□□ -2.02
CUX1P39880 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.44□□□□□ -2.02
CUX1P39880 AL731537.2-201ENST00000561565 951 ntBASIC2.44□□□□□ -2.02
CUX1P39880 AL592494.3-201ENST00000609485 464 ntBASIC2.44□□□□□ -2.02
CUX1P39880 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CUX1P39880 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CUX1P39880 AC012181.1-201ENST00000479895 423 ntBASIC2.43□□□□□ -2.02
CUX1P39880 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.43□□□□□ -2.02
CUX1P39880 RNU4ATAC11P-201ENST00000515939 126 ntBASIC2.43□□□□□ -2.02
CUX1P39880 RNA5SP364-201ENST00000516938 78 ntBASIC2.43□□□□□ -2.02
CUX1P39880 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.43□□□□□ -2.02
CUX1P39880 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.43□□□□□ -2.02
CUX1P39880 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CUX1P39880 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CUX1P39880 RNU1-93P-201ENST00000364704 169 ntBASIC2.42□□□□□ -2.02
CUX1P39880 ELOCP10-201ENST00000440624 327 ntBASIC2.42□□□□□ -2.02
CUX1P39880 RPS15AP1-201ENST00000457423 391 ntBASIC2.42□□□□□ -2.02
CUX1P39880 RNU7-157P-201ENST00000459600 66 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC011979.1-201ENST00000472300 483 ntBASIC2.42□□□□□ -2.02
CUX1P39880 RPL21P93-201ENST00000480465 489 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC233702.1-201ENST00000482905 502 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC093591.1-201ENST00000491435 481 ntBASIC2.42□□□□□ -2.02
CUX1P39880 HMGN1P7-201ENST00000491722 313 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC025755.1-201ENST00000521306 278 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC139103.1-201ENST00000534696 1030 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AC016957.1-201ENST00000534895 309 ntBASIC2.42□□□□□ -2.02
CUX1P39880 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.42□□□□□ -2.02
CUX1P39880 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.42□□□□□ -2.02
CUX1P39880 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC2.42□□□□□ -2.02
CUX1P39880 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.42□□□□□ -2.02
CUX1P39880 MIR4512-201ENST00000583257 77 ntBASIC2.42□□□□□ -2.02
CUX1P39880 ELOCP34-201ENST00000604436 327 ntBASIC2.42□□□□□ -2.02
CUX1P39880 U73479.1-201ENST00000618062 168 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms