Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 Y_RNA.133-201ENST00000363428 110 ntBASIC4.29□□□□□ -1.72
MSX2P35548 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
MSX2P35548 RNU6-1279P-201ENST00000383917 103 ntBASIC4.29□□□□□ -1.72
MSX2P35548 Y_RNA.459-201ENST00000384251 102 ntBASIC4.29□□□□□ -1.72
MSX2P35548 RNU6-463P-201ENST00000384340 107 ntBASIC4.29□□□□□ -1.72
MSX2P35548 MIR708-201ENST00000390708 88 ntBASIC4.29□□□□□ -1.72
MSX2P35548 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX2P35548 AL592114.1-201ENST00000403842 483 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.29□□□□□ -1.72
MSX2P35548 RPL23AP27-201ENST00000415161 451 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 AC004552.1-201ENST00000419089 348 ntBASIC4.29□□□□□ -1.72
MSX2P35548 RPS12P5-201ENST00000423449 371 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC005517.2-201ENST00000424673 553 ntBASIC4.29□□□□□ -1.72
MSX2P35548 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.29□□□□□ -1.72
MSX2P35548 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 RPL12P3-201ENST00000440080 396 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.29□□□□□ -1.72
MSX2P35548 RPS26P3-201ENST00000470205 348 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC090543.2-201ENST00000483963 348 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC004057.1-201ENST00000485827 348 ntBASIC4.29□□□□□ -1.72
MSX2P35548 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 AC015795.1-201ENST00000513669 327 ntBASIC4.29□□□□□ -1.72
MSX2P35548 HIGD1AP3-201ENST00000515857 278 ntBASIC4.29□□□□□ -1.72
MSX2P35548 RNU6-1088P-201ENST00000516850 104 ntBASIC4.29□□□□□ -1.72
MSX2P35548 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.29□□□□□ -1.72
MSX2P35548 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 COPS8P3-201ENST00000526024 482 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.29□□□□□ -1.72
MSX2P35548 AC109635.4-202ENST00000531666 412 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC092490.3-201ENST00000545370 572 ntBASIC4.29□□□□□ -1.72
MSX2P35548 HMGN2P6-201ENST00000551091 273 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.29□□□□□ -1.72
MSX2P35548 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.29□□□□□ -1.72
MSX2P35548 AL139395.1-201ENST00000603662 160 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AC092807.2-201ENST00000609367 243 ntBASIC4.29□□□□□ -1.72
MSX2P35548 MIR6748-201ENST00000610433 71 ntBASIC4.29□□□□□ -1.72
MSX2P35548 AP001486.3-201ENST00000615334 372 ntBASIC4.29□□□□□ -1.72
MSX2P35548 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.29□□□□□ -1.72
MSX2P35548 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSX2P35548 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSX2P35548 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
MSX2P35548 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX2P35548 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSX2P35548 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.28□□□□□ -1.72
MSX2P35548 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX2P35548 OR5P1P-201ENST00000299512 925 ntBASIC4.28□□□□□ -1.72
MSX2P35548 Y_RNA.31-201ENST00000362574 102 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RHOT1P2-201ENST00000366423 333 ntBASIC4.28□□□□□ -1.72
MSX2P35548 SNORA22B-201ENST00000383876 138 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RNU6-641P-201ENST00000384006 107 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RNU6-1013P-201ENST00000384180 107 ntBASIC4.28□□□□□ -1.72
MSX2P35548 MIR548F5-201ENST00000408421 86 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RNU2-39P-201ENST00000410604 198 ntBASIC4.28□□□□□ -1.72
MSX2P35548 Y_RNA.625-201ENST00000411256 107 ntBASIC4.28□□□□□ -1.72
MSX2P35548 ARL5AP1-201ENST00000418991 388 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC069213.2-201ENST00000420238 366 ntBASIC4.28□□□□□ -1.72
MSX2P35548 PMCHL1-202ENST00000423102 261 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC127537.2-201ENST00000439258 465 ntBASIC4.28□□□□□ -1.72
MSX2P35548 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.28□□□□□ -1.72
MSX2P35548 AURKAPS2-201ENST00000454983 333 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.28□□□□□ -1.72
MSX2P35548 RNU6-1208P-201ENST00000459588 107 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 RPSAP50-201ENST00000481955 852 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC083904.1-201ENST00000487828 231 ntBASIC4.28□□□□□ -1.72
MSX2P35548 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 AC068305.1-201ENST00000497406 726 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC231760.1-201ENST00000498002 260 ntBASIC4.28□□□□□ -1.72
MSX2P35548 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSX2P35548 CCDC34P1-201ENST00000507441 517 ntBASIC4.28□□□□□ -1.72
MSX2P35548 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 Y_RNA.682-201ENST00000516457 100 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RNU6-1038P-201ENST00000516516 104 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RNU7-51P-201ENST00000516560 62 ntBASIC4.28□□□□□ -1.72
MSX2P35548 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.28□□□□□ -1.72
MSX2P35548 IFITM8P-201ENST00000522529 394 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.28□□□□□ -1.72
MSX2P35548 DEFB109D-201ENST00000529497 240 ntBASIC4.28□□□□□ -1.72
MSX2P35548 APOOP3-201ENST00000536787 586 ntBASIC4.28□□□□□ -1.72
MSX2P35548 CYP4A43P-201ENST00000568156 121 ntBASIC4.28□□□□□ -1.72
MSX2P35548 RN7SL652P-201ENST00000577769 300 ntBASIC4.28□□□□□ -1.72
MSX2P35548 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.28□□□□□ -1.72
MSX2P35548 AC019193.3-201ENST00000609144 554 ntBASIC4.28□□□□□ -1.72
MSX2P35548 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
MSX2P35548 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.28□□□□□ -1.72
MSX2P35548 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.28□□□□□ -1.72
MSX2P35548 AC139769.1-204ENST00000472297 1931 ntBASIC4.28□□□□□ -1.72
MSX2P35548 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSX2P35548 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms