Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL445669.1-201ENST00000426743 755 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 ARPC3P1-201ENST00000437218 533 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 PPP1R2P5-201ENST00000457256 603 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 RPL37P6-202ENST00000464216 403 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.59□□□□□ -2.15
HMGA1P17096 RPS15AP36-201ENST00000492022 382 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.59□□□□□ -2.15
HMGA1P17096 MTATP6P22-201ENST00000507369 598 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.59□□□□□ -2.15
HMGA1P17096 RNA5SP471-201ENST00000516971 106 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 RN7SKP40-201ENST00000517211 242 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 MTCO1P47-201ENST00000523889 1271 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 OR4V1P-201ENST00000525394 1140 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.59□□□□□ -2.15
HMGA1P17096 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGA1P17096 AL133507.1-201ENST00000605269 557 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.59□□□□□ -2.15
HMGA1P17096 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGA1P17096 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGA1P17096 AC079597.1-201ENST00000624306 508 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGA1P17096 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGA1P17096 AC135776.4-201ENST00000624300 1904 ntBASIC1.59□□□□□ -2.15
HMGA1P17096 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
HMGA1P17096 ADAM3A-203ENST00000461344 2157 ntBASIC1.59□□□□□ -2.16
HMGA1P17096 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
HMGA1P17096 SNORA14A-201ENST00000364773 135 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 RNU6-234P-201ENST00000365229 104 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 RNU1-52P-201ENST00000384190 164 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AL513185.2-201ENST00000425543 193 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGA1P17096 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.58□□□□□ -2.16
HMGA1P17096 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.58□□□□□ -2.16
HMGA1P17096 BX322784.1-201ENST00000455793 1077 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 RBM43P1-201ENST00000476891 1081 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 MRPL42P6-201ENST00000486397 371 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HMGA1P17096 RNU4-60P-201ENST00000517239 135 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.58□□□□□ -2.16
HMGA1P17096 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.58□□□□□ -2.16
HMGA1P17096 OR6C73P-201ENST00000546432 358 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 NBEAP1-201ENST00000554452 979 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGA1P17096 GMCL1P2-201ENST00000605230 823 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 AC112503.2-201ENST00000609005 552 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 uc_338.5-201ENST00000611839 155 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGA1P17096 BX649567.1-201ENST00000642071 1134 ntBASIC1.58□□□□□ -2.16
HMGA1P17096 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HMGA1P17096 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.58□□□□□ -2.16
HMGA1P17096 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HMGA1P17096 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.57□□□□□ -2.16
HMGA1P17096 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGA1P17096 RNU6-799P-201ENST00000363567 107 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 RNU4-7P-201ENST00000364758 141 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 SNORA6-201ENST00000384033 151 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 AC069277.2-201ENST00000454211 432 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 AC140059.1-201ENST00000489238 361 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HMGA1P17096 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 Y_RNA.676-201ENST00000516393 96 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 AC087441.2-201ENST00000529141 262 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 REXO2-218ENST00000544827 880 ntTSL 3 BASIC1.57□□□□□ -2.16
HMGA1P17096 FAM106CP-201ENST00000582212 507 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HMGA1P17096 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC1.57□□□□□ -2.16
HMGA1P17096 AL359821.1-201ENST00000605519 182 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
HMGA1P17096 AC008083.4-201ENST00000615076 444 ntBASIC1.57□□□□□ -2.16
HMGA1P17096 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.57□□□□□ -2.16
HMGA1P17096 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
HMGA1P17096 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
HMGA1P17096 Y_RNA.164-201ENST00000363709 102 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 RNU6-461P-201ENST00000364195 107 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.56□□□□□ -2.16
HMGA1P17096 MIR524-201ENST00000385242 87 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.56□□□□□ -2.16
HMGA1P17096 AL353729.1-201ENST00000425044 720 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 AC233728.2-201ENST00000425348 757 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 PGBD4P3-201ENST00000440731 581 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 UBE2V2P4-201ENST00000447495 259 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 HMGN1P8-201ENST00000463578 288 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 MTCO3P35-201ENST00000485582 781 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 AC005840.1-201ENST00000498412 377 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.56□□□□□ -2.16
HMGA1P17096 AC010546.1-201ENST00000569391 485 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.56□□□□□ -2.16
HMGA1P17096 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HMGA1P17096 AC099654.7-201ENST00000635788 2127 ntBASIC1.55□□□□□ -2.16
HMGA1P17096 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
HMGA1P17096 AC013404.1-201ENST00000413068 249 ntBASIC1.55□□□□□ -2.16
HMGA1P17096 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.55□□□□□ -2.16
HMGA1P17096 AL354695.1-201ENST00000427935 228 ntBASIC1.55□□□□□ -2.16
HMGA1P17096 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms